use link to plazi treatment uris; include treatment deprecations for …

…now; #23
globalbioticinteractions · Sep 30, 2020 · 43f016c · 43f016c
1 parent 450f256
commit 43f016c
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diff --git a/...esolver/src/main/java/org/globalbioticinteractions/nomer/match/PlaziTreatmentsLoader.java b/...esolver/src/main/java/org/globalbioticinteractions/nomer/match/PlaziTreatmentsLoader.java
@@ -37,8 +37,7 @@ public static void importTreatment(InputStream treatmentGraph, TaxonCacheListene
                         "PREFIX dwc: <http://rs.tdwg.org/dwc/terms/>\n" +
                         "PREFIX dc: <http://purl.org/dc/elements/1.1/>\n" +
                         "SELECT * WHERE { \n" +
-                        "  ?treatment (trt:augmentsTaxonConcept|trt:definesTaxonConcept) ?tc .\n" +
-//                        "  ?treatment (trt:augmentsTaxonConcept|trt:definesTaxonConcept|trt:deprecates) ?tc .\n" +
+                        "  ?treatment (trt:augmentsTaxonConcept|trt:definesTaxonConcept|trt:deprecates) ?tc .\n" +
                         "  ?tc trt:hasTaxonName ?tn .\n" +
                         "  ?tc a fp:TaxonConcept .\n" +
                         "  ?treatment trt:publishedIn ?publication .\n" +

diff --git a/...ver/src/test/java/org/globalbioticinteractions/nomer/match/PlaziTreatmentsLoaderTest.java b/...ver/src/test/java/org/globalbioticinteractions/nomer/match/PlaziTreatmentsLoaderTest.java
@@ -50,7 +50,7 @@ public void finish() {
         assertThat(counter.get(), Is.is(1));
 
         Taxon taxon = taxa.get(0);
-        assertThat(taxon.getExternalId(), Is.is("http://taxon-concept.plazi.org/id/Animalia/Carvalhoma_Slater_1977"));
+        assertThat(taxon.getExternalId(), Is.is("http://treatment.plazi.org/id/000087F6E320FF95FF7EFDC1FAE4FA7B"));
         assertThat(taxon.getName(), Is.is("Carvalhoma"));
         assertThat(taxon.getRank(), Is.is("genus"));