Bump scipy from 1.12.0 to 1.13.0

[dependabot]

Bumps scipy from 1.12.0 to 1.13.0.

Release notes

Sourced from scipy's releases.

SciPy 1.13.0 Release Notes

SciPy 1.13.0 is the culmination of 3 months of hard work. This out-of-band release aims to support NumPy 2.0.0, and is backwards compatible to NumPy 1.22.4. The version of OpenBLAS used to build the PyPI wheels has been increased to 0.3.26.dev.

This release requires Python 3.9+ and NumPy 1.22.4 or greater.

For running on PyPy, PyPy3 6.0+ is required.

Highlights of this release

• Support for NumPy 2.0.0.
• Interactive examples have been added to the documentation, allowing users to run the examples locally on embedded Jupyterlite notebooks in their browser.
• Preliminary 1D array support for the COO and DOK sparse formats.
• Several scipy.stats functions have gained support for additional axis, nan_policy, and keepdims arguments. scipy.stats also has several performance and accuracy improvements.

New features

scipy.integrate improvements

• The terminal attribute of scipy.integrate.solve_ivp events callables now additionally accepts integer values to specify a number of occurrences required for termination, rather than the previous restriction of only accepting a bool value to terminate on the first registered event.

scipy.io improvements

• scipy.io.wavfile.write has improved dtype input validation.

scipy.interpolate improvements

• The Modified Akima Interpolation has been added to interpolate.Akima1DInterpolator, available via the new method argument.
• New method BSpline.insert_knot inserts a knot into a BSpline instance. This routine is similar to the module-level scipy.interpolate.insert function, and works with the BSpline objects instead of tck tuples.

... (truncated)

Commits

• 7dcd8c5 REL: 1.13.0 release commit [wheel build]
• 15a69da Merge pull request #20375 from tylerjereddy/treddy_prep_1_13_0_final
• 4cbb9e8 DOC: PR 20375 revisions
• 2431661 MAINT: PR 20375 revisions [wheel build]
• b85940a DOC, REL: set 1.13.0 final unreleased
• 13c30bd MAINT: spatial: simplify meson.build
• abb04b2 MAINT: spatial: use cython_lapack in spatial/_qhull.pyx
• 729ff0f BUG: interpolate: Fix wrong warning message if degree=-1 in `interpolate.RBFI...
• 8d82b0a MAINT, BUG: bump OpenBLAS (#20362)
• 0e67a72 MAINT: backport amos license update
• Additional commits viewable in compare view

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[github-actions]

👈 Launch a binder notebook on branch glotaran/pyglotaran/dependabot/pip/scipy-1.13.0

[sonarcloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
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See analysis details on SonarCloud

[github-actions]

Benchmark is done. Checkout the benchmark result page.
Benchmark differences below 5% might be due to CI noise.

Benchmark diff v0.7.2 vs. main

All benchmarks:

| Change   | Before [1fb14bbc] <v0.7.2>   | After [d1cd0bc0]    |   Ratio | Benchmark (Parameter)                   |
|----------|------------------------------|---------------------|---------|-----------------------------------------|
|          | 238M                         | 237M                |    1    | IntegrationTwoDatasets.peakmem_optimize |
|          | 1.64±0.04s                   | 1.53±0.08s          |    0.93 | IntegrationTwoDatasets.time_optimize    |

Benchmark diff main vs. PR

All benchmarks:

| Change   | Before [d1cd0bc0]    | After [612dfb1d]    |   Ratio | Benchmark (Parameter)                   |
|----------|----------------------|---------------------|---------|-----------------------------------------|
|          | 237M                 | 238M                |    1    | IntegrationTwoDatasets.peakmem_optimize |
|          | 1.53±0.08s           | 1.44±0.05s          |    0.94 | IntegrationTwoDatasets.time_optimize    |