n_taxa = is not working for me

[momodiame21]

The n_taxa option does not work for me. Please see below. Also the tax_level = "" option doesnt work. It brings this error
unused arguments (n_taxa = 10, tax_level = "Species")

top_asv <- top_taxa(GlobalPatterns, n_taxa = 10)
Error in top_taxa(GlobalPatterns, n_taxa = 10) : unused argument (n_taxa = 10)
top_asv <- top_taxa(GlobalPatterns) 

[gmteunisse]

Hello, can you please provide your session info? I think you are using microbiome::top_taxa rather than fantaxtic::top_taxa. PS I answered your other issue, but never heard back from you. By the sound of it, your other issue has been resolved - please let me know if the provided solution resolved your issue, and if so, close the issue.

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________________________________ From: momodiame21 ***@***.***> Sent: Tuesday, April 30, 2024 11:05:03 AM To: gmteunisse/fantaxtic ***@***.***> Cc: Subscribed ***@***.***> Subject: [gmteunisse/fantaxtic] n_taxa = is not working for me (Issue #31) The n_taxa option does not work for me. Please see below. Also the tax_level = "" option doesnt work. It brings this error unused arguments (n_taxa = 10, tax_level = "Species") top_asv <- top_taxa(GlobalPatterns, n_taxa = 10) Error in top_taxa(GlobalPatterns, n_taxa = 10) : unused argument (n_taxa = 10) top_asv <- top_taxa(GlobalPatterns) — Reply to this email directly, view it on GitHub<#31>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AHBWS3XDFDIXYI7H7SJAFCDY75ND7AVCNFSM6AAAAABG73BO62VHI2DSMVQWIX3LMV43ASLTON2WKOZSGI3TAOJSGQ2DCNI>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[momodiame21]

Thanks. I unloaded microbiome and the top_taxa is now working for fantaxtic.