updated install files for python 36

dependencies_py36.txt

@@ -1,5 +1,5 @@
 clint>=0.5.1,<=0.6
-mpi4py>=2.0.0,<=2.1
+mpi4py>=2.0.0,<=3.0
 numpy>=1.12.1,<=1.13
 h5py>=2.6.0,<=2.8.0
 scipy>=0.19.0,<=1.1.0

docs/env/conda_environment_py36_osx64.yml

@@ -1,185 +1,70 @@
 name: WDmodel
 channels:
+  - cburns1
   - mpi4py
   - defaults
   - http://ssb.stsci.edu/astroconda
   - conda-forge
 dependencies:
   - args=0.1.0=py36_0
+  - ca-certificates=2018.4.16=0
   - celerite=0.3.0=py36_0
+  - certifi=2018.4.16=py36_0
   - clint=0.5.1=py36_0
   - corner=2.0.1=py36_0
   - emcee=2.2.1=py36_3
-  - extinction=0.3.0=np113py36_0
-  - george=0.3.1=py36_0
+  - extinction=0.3.0=np112py36_0
+  - mpi=1.0=mpich
+  - mpi4py=3.0.0=py36_0
+  - mpich=3.2.1=0
+  - openssl=1.0.2o=0
+  - pybind11=2.2.3=py36_0
   - uncertainties=3.0.2=py36_1
-  - _nb_ext_conf=0.4.0=py36_1
-  - alabaster=0.7.10=py36h174008c_0
-  - anaconda-client=1.6.14=py36_0
-  - appnope=0.1.0=py36hf537a9a_0
-  - asn1crypto=0.24.0=py36_0
   - astropy=3.0.2=py36h917ab60_1
-  - attrs=17.4.0=py36_0
-  - babel=2.5.3=py36_0
-  - backcall=0.1.0=py36_0
-  - bleach=2.1.3=py36_0
-  - ca-certificates=2018.03.07=0
-  - cctools=895=h7512d6f_0
-  - certifi=2018.4.16=py36_0
-  - cffi=1.11.5=py36h342bebf_0
-  - chardet=3.0.4=py36h96c241c_1
-  - clang=4.0.1=h662ec87_0
-  - clang_osx-64=4.0.1=h1ce6c1d_10
-  - clangxx=4.0.1=hc9b4283_0
-  - clangxx_osx-64=4.0.1=h22b1bf0_10
-  - clyent=1.2.2=py36hae3ad88_0
-  - compiler-rt=4.0.1=h5487866_0
-  - coverage=4.5.1=py36h1de35cc_0
-  - cryptography=2.2.2=py36h1de35cc_0
+  - attrs=18.1.0=py36_0
   - cycler=0.10.0=py36hfc81398_0
-  - dbus=1.13.2=h760590f_1
-  - decorator=4.3.0=py36_0
-  - docutils=0.14=py36hbfde631_0
-  - entrypoints=0.2.3=py36hd81d71f_2
-  - expat=2.2.5=hb8e80ba_0
   - freetype=2.8=h12048fb_1
-  - gettext=0.19.8.1=h15daf44_3
-  - glib=2.56.1=h35bc53a_0
   - h5py=2.7.1=py36h39cdac5_0
   - hdf5=1.10.1=ha036c08_1
-  - html5lib=1.0.1=py36h2f9c1c0_0
-  - hypothesis=3.56.0=py36_0
-  - icu=58.2=h4b95b61_1
-  - idna=2.6=py36h8628d0a_1
-  - imagesize=1.0.0=py36_0
+  - iminuit=1.2=py36h449f2c2_0
   - intel-openmp=2018.0.0=8
-  - ipykernel=4.8.2=py36_0
-  - ipython=6.3.1=py36_0
-  - ipython_genutils=0.2.0=py36h241746c_0
-  - ipywidgets=7.2.1=py36_0
-  - jedi=0.12.0=py36_0
-  - jinja2=2.10=py36hd36f9c5_0
-  - joblib=0.11=py36_0
-  - jpeg=9b=he5867d9_2
-  - jsonschema=2.6.0=py36hb385e00_0
-  - jupyter=1.0.0=py36_4
-  - jupyter_client=5.2.3=py36_0
-  - jupyter_console=5.2.0=py36hccf5b1c_1
-  - jupyter_core=4.4.0=py36h79cf704_0
   - kiwisolver=1.0.1=py36h792292d_0
-  - ld64=274.2=h7c2db76_0
   - libcxx=4.0.1=h579ed51_0
   - libcxxabi=4.0.1=hebd6815_0
-  - libedit=3.1=hb4e282d_0
+  - libedit=3.1.20170329=hb402a30_2
   - libffi=3.2.1=h475c297_4
   - libgfortran=3.0.1=h93005f0_2
-  - libgpuarray=0.7.5=h1de35cc_0
-  - libiconv=1.15=hdd342a3_7
   - libpng=1.6.34=he12f830_0
-  - libsodium=1.0.16=h3efe00b_0
-  - llvm=4.0.1=hc748206_0
-  - llvm-lto-tapi=4.0.1=h6701bc3_0
-  - mako=1.0.7=py36h55379d4_0
-  - markupsafe=1.0=py36h3a1e703_1
   - matplotlib=2.2.2=py36ha7267d0_0
-  - mistune=0.8.3=py36h1de35cc_1
   - mkl=2018.0.2=1
-  - mkl-service=1.1.2=py36h7ea6df4_4
-  - mkl_fft=1.0.1=py36h917ab60_0
-  - mkl_random=1.0.1=py36h78cc56f_0
   - more-itertools=4.1.0=py36_0
-  - nb_anacondacloud=1.4.0=py36_0
-  - nb_conda=2.2.1=py36h349edbb_0
-  - nb_conda_kernels=2.1.0=py36_0
-  - nbconvert=5.3.1=py36h810822e_0
-  - nbformat=4.4.0=py36h827af21_0
-  - nbpresent=3.0.2=py36hef4c988_1
-  - ncurses=6.0=hd04f020_2
-  - nose=1.3.7=py36h73fae2b_2
-  - notebook=5.4.1=py36_0
-  - numpy=1.13.3=py36ha9ae307_4
-  - numpydoc=0.8.0=py36_0
-  - openssl=1.0.2o=h26aff7b_0
-  - packaging=17.1=py36_0
-  - pandas=0.22.0=py36h0a44026_0
-  - pandoc=1.19.2.1=ha5e8f32_1
-  - pandocfilters=1.4.2=py36h3b0b094_1
-  - parso=0.2.0=py36_0
-  - path.py=11.0.1=py36_0
-  - patsy=0.5.0=py36_0
-  - pcre=8.42=h378b8a2_0
-  - pexpect=4.5.0=py36_0
-  - pickleshare=0.7.4=py36hf512f8e_0
-  - pip=9.0.3=py36_0
-  - pkginfo=1.4.2=py36_1
+  - ncurses=6.1=h0a44026_0
+  - numpy=1.12.1=py36h8871d66_1
+  - pip=10.0.1=py36_0
   - pluggy=0.6.0=py36hb1d0581_0
-  - prompt_toolkit=1.0.15=py36haeda067_0
   - psutil=5.4.5=py36h1de35cc_0
-  - ptyprocess=0.5.2=py36he6521c3_0
   - py=1.5.3=py36_0
-  - pycparser=2.18=py36h724b2fc_1
-  - pygments=2.2.0=py36h240cd3f_0
-  - pygpu=0.7.5=py36h1de35cc_0
-  - pymc3=3.3=py36_0
-  - pympler=0.5=py36hc2752d1_0
-  - pyopenssl=17.5.0=py36h51e4350_0
   - pyparsing=2.2.0=py36hb281f35_0
-  - pyqt=5.9.2=py36h11d3b92_0
-  - pysocks=1.6.8=py36_0
-  - pytest=3.5.0=py36_0
+  - pytest=3.5.1=py36_0
   - pytest-arraydiff=0.2=py36_0
   - pytest-astropy=0.3.0=py36_0
   - pytest-doctestplus=0.1.3=py36_0
   - pytest-openfiles=0.3.0=py36_0
   - pytest-remotedata=0.2.1=py36_0
-  - python=3.6.5=hc167b69_0
-  - python-dateutil=2.7.2=py36_0
+  - python=3.6.5=hc167b69_1
+  - python-dateutil=2.7.3=py36_0
   - pytz=2018.4=py36_0
-  - pyyaml=3.12=py36h2ba1e63_1
-  - pyzmq=17.0.0=py36h1de35cc_1
-  - qt=5.9.5=h02808f3_0
-  - qtconsole=4.3.1=py36hd96c0ff_0
   - readline=7.0=hc1231fa_4
-  - requests=2.18.4=py36h4516966_1
-  - requests-toolbelt=0.8.0=py36_0
-  - scipy=1.0.1=py36hcaad992_0
-  - seaborn=0.8.1=py36h595ecd9_0
-  - send2trash=1.5.0=py36_0
-  - setuptools=39.0.1=py36_0
-  - simplegeneric=0.8.1=py36_2
-  - sip=4.19.8=py36h0a44026_0
+  - scipy=1.1.0=py36hcaad992_0
+  - setuptools=39.1.0=py36_0
   - six=1.11.0=py36h0e22d5e_1
-  - snowballstemmer=1.2.1=py36h6c7b616_0
-  - sphinx=1.7.3=py36_0
-  - sphinxcontrib=1.0=py36h9364dc8_1
-  - sphinxcontrib-websupport=1.0.1=py36h92f4a7a_1
   - sqlite=3.23.1=hf1716c9_0
-  - statsmodels=0.8.0=py36h9c68fc9_0
-  - terminado=0.8.1=py36_1
-  - testpath=0.3.1=py36h625a49b_0
-  - theano=1.0.1=py36h04f5b5a_0
   - tk=8.6.7=h35a86e2_3
   - tornado=5.0.2=py36_0
-  - tqdm=4.23.0=py36_0
-  - traitlets=4.3.2=py36h65bd3ce_0
-  - twine=1.11.0=py36_0
-  - typing=3.6.4=py36_0
-  - urllib3=1.22=py36h68b9469_0
-  - wcwidth=0.1.7=py36h8c6ec74_0
-  - webencodings=0.5.1=py36h3b9701d_1
-  - wheel=0.31.0=py36_0
-  - widgetsnbextension=3.2.1=py36_0
-  - xz=5.2.3=h727817e_4
-  - yaml=0.1.7=hc338f04_2
-  - zeromq=4.2.5=h378b8a2_0
+  - wheel=0.31.1=py36_0
+  - xz=5.2.4=h1de35cc_4
   - zlib=1.2.11=hf3cbc9b_2
-  - zope=1.0=py36_0
-  - zope.interface=4.5.0=py36h1de35cc_0
   - pysynphot=0.9.12=py36_0
-  - mpich=3.2.0=0
-  - pip:
-    - iminuit==1.2
-    - mpi4py==2.0.0
-    - pybind11==2.1.1
+  - openmpi=1.10.2=0
 prefix: /Users/gnarayan/anaconda3/envs/WDmodel
 

setup.py

@@ -2,13 +2,20 @@
 """
 Setup script for the WDmodel package
 """
+import sys
 import os
 import re
 import glob
 
 from setuptools import find_packages, setup
 
-with open('dependencies_py27.txt','r') as f:
+
+if sys.version_info.major == 2:
+    dep_file = 'dependencies_py27.txt'
+else:
+    dep_file = 'dependencies_py36.txt'
+
+with open(dep_file,'r') as f:
     required = f.read().splitlines()
 
 dir_path = os.path.dirname(os.path.realpath(__file__))