Description

Repository of R/Bioc/shell code of master theses and graduate final projects since 2018.

MSc thesis projects

• Berta Franch Martínez. Transcriptomic effect of radiomic features in the change of lung function patients with chronic obstructive pulmonary disease (COPD). Master in Bioinformatics & Biostatistics, Universitat Oberta de Catalunya (UOC). January 2023. Script Repository

• Carlos Lopez. RNA-seq analysis using radiomic features calculated from lungs of patients with COPD. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2022. Script Repository.

• Carla Casanova. RNA-seq analysis using radiomic features calculated from lungs of patients with COPD. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2022. Script Repository.

• Laura Balague. Common inversion polymorphisms and their role in Autism Spectrum Disorders. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2020. Script Repository.

• Natalia Carreras. Mediation analysis of the association between polymorphic inversions and human traits with multi-omic data. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2020. Script Repository.

• Isaac de la Hoz. Obesity susceptibility genes in a Spanish population using sequencing data. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2019. Script Repository.

• Elia Palma. Transcriptome signatures of secondary tumors after radiotherapy. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2019. Script Repository.

• Gema Rojas. Extreme downregulation prediction using DNA methylation data: application to enviromental exposure studies. Master in Bioinformatics, Universitat Autonoma de Barcelona (UAB). July 2019. Script Repository.

• Jonatan Gonzalez. Type 2 diabetes prection based on genomic data with deep learning algorithms. Omic Data Analysis, Universitat de Vic (UVic). September 2019. Script Repository.

• Mireia Ballesta . Machine learning methods in personalized medicine: application to genomic data in Alzheimer's disease. Omic Data Analysis, Universitat de Vic (UVic). September 2018. link.

• Laureano Tomas. Polygenic Risk Score in complex diseases. Omic Data Analysis, Universitat de Vic (UVic). September 2018. Script Repository.

• Celia Mallafre. Interaction of alcohol and smoking and loss of chromosome Y in cancer. Omic Data Analysis, Universitat de Vic (UVic). September 2018. Script Repository.

Graduate final projects

• Claudia Serrano. Parallel implementation of singular value decomposition with application to genomic data. Graduate of Mathematics, Universitat Autònoma de Barcelona (UAB). June 2019. Script Repository
• Daniel Guinon Fort: Machine learning methods for Genome Wide Association Studies: Predicting diabetes risk from genomic data. Graduate of Statistics, Universitat Autonoma de Barcelona (UAB). September 2019. Script Repository
• Dolors Pelegri: Lineal algebra of Big Data: omic data analysis with DelayedArray objects. June 2019. Bioconductor Package.