Branching process:
-
Run “create_data_new_format.R” to get covid-19 case data from JHU GitHub.
-
Run “run_state_confirmed.m” to train branching process on confirmed cases, run “run_states.m” to train branching process model on death counts.
-
csv files “mod_compare_state” and “mod_compare_state_confirmed” contain data corresponding to table 1 in the paper.
Comparison to SIR/SEIR
- Run model_compare.R to create sir/seir data for table 1 in the paper.
Country level dynamic R estimate
- Code located in dynamic_R folder (run create_data_updated.R followed by run_all_updated.m)