Fixing the empty shard issue for call_variant for real.

Unit test will be fixed in a separate change. PiperOrigin-RevId: 194849626
google · May 1, 2018 · 12f9e67 · 12f9e67
1 parent cf2ae1e
commit 12f9e67
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/deepvariant/call_variants.py b/deepvariant/call_variants.py
@@ -297,6 +297,7 @@ def call_variants(examples_filename,
     logging.warning('Unable to read any records from %s. Output will contain '
                     'zero records.', examples_filename)
     io_utils.write_tfrecords([], output_file)
+    return
   elif example_format != 'raw':
     raise ValueError('The TF examples in {} has image/format \'{}\' '
                      '(expected \'raw\') which means you might need to rerun '