Skip to content

Commit

Permalink
docs: Add FAFB dataset link.
Browse files Browse the repository at this point in the history
  • Loading branch information
jbms committed Nov 30, 2018
1 parent 66be219 commit 05adaf3
Showing 1 changed file with 6 additions and 0 deletions.
6 changes: 6 additions & 0 deletions README.md
Expand Up @@ -20,6 +20,12 @@ The four-pane view consists of 3 orthogonal cross-sectional views as well as a 3

This dataset was copied from <https://www.janelia.org/project-team/flyem/data-and-software-release>, and is made available under the [Open Data Common Attribution License](http://opendatacommons.org/licenses/by/1.0/). Paper: <a href="http://dx.doi.org/10.1073/pnas.1509820112" target="_blank">Takemura, Shin-ya et al. "Synaptic Circuits and Their Variations within Different Columns in the Visual System of Drosophila." Proceedings of the National Academy of Sciences of the United States of America 112.44 (2015): 13711-13716.</a>

- FAFB: A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster. <a href="https://neuroglancer-demo.appspot.com/?#!%7B%22layers%22:%7B%22fafb_v14%22:%7B%22source%22:%22precomputed://gs://neuroglancer-fafb-data/fafb_v14/fafb_v14_orig%22%2C%22type%22:%22image%22%7D%2C%22fafb_v14_clahe%22:%7B%22source%22:%22precomputed://gs://neuroglancer-fafb-data/fafb_v14/fafb_v14_clahe%22%2C%22type%22:%22image%22%2C%22visible%22:false%7D%2C%22neuropil-regions-surface%22:%7B%22type%22:%22segmentation%22%2C%22mesh%22:%22precomputed://gs://neuroglancer-fafb-data/elmr-data/FAFBNP.surf/mesh%22%2C%22segments%22:%5B%221%22%2C%2210%22%2C%2211%22%2C%2212%22%2C%2213%22%2C%2214%22%2C%2215%22%2C%2216%22%2C%2217%22%2C%2218%22%2C%2219%22%2C%222%22%2C%2220%22%2C%2221%22%2C%2222%22%2C%2223%22%2C%2224%22%2C%2225%22%2C%2226%22%2C%2227%22%2C%2228%22%2C%2229%22%2C%223%22%2C%2230%22%2C%2231%22%2C%2232%22%2C%2233%22%2C%2234%22%2C%2235%22%2C%2236%22%2C%2237%22%2C%2238%22%2C%2239%22%2C%224%22%2C%2240%22%2C%2241%22%2C%2242%22%2C%2243%22%2C%2244%22%2C%2245%22%2C%2246%22%2C%2247%22%2C%2248%22%2C%2249%22%2C%225%22%2C%2250%22%2C%2251%22%2C%2252%22%2C%2253%22%2C%2254%22%2C%2255%22%2C%2256%22%2C%2257%22%2C%2258%22%2C%2259%22%2C%226%22%2C%2260%22%2C%2261%22%2C%2262%22%2C%2263%22%2C%2264%22%2C%2265%22%2C%2266%22%2C%2267%22%2C%2268%22%2C%2269%22%2C%227%22%2C%2270%22%2C%2271%22%2C%2272%22%2C%2273%22%2C%2274%22%2C%2275%22%2C%228%22%2C%229%22%5D%7D%2C%22neuropil-full-surface%22:%7B%22type%22:%22mesh%22%2C%22source%22:%22vtk://https://storage.googleapis.com/neuroglancer-fafb-data/elmr-data/FAFB.surf.vtk.gz%22%2C%22vertexAttributeSources%22:%5B%5D%2C%22shader%22:%22void%20main%28%29%20%7B%5Cn%20%20emitRGBA%28vec4%281.0%2C%200.0%2C%200.0%2C%200.5%29%29%3B%5Cn%7D%5Cn%22%2C%22visible%22:false%7D%7D%2C%22navigation%22:%7B%22pose%22:%7B%22position%22:%7B%22voxelSize%22:%5B4%2C4%2C40%5D%2C%22voxelCoordinates%22:%5B123943.625%2C73323.8828125%2C5234%5D%7D%7D%2C%22zoomFactor%22:1210.991144617663%7D%2C%22perspectiveOrientation%22:%5B-0.28037887811660767%2C-0.19049881398677826%2C-0.13574382662773132%2C-0.9309519529342651%5D%2C%22perspectiveZoom%22:21335.91710335963%2C%22layout%22:%22xy-3d%22%7D" target="_blank">Open viewer.</a>

This dataset was copied from <https://www.temca2data.org/>, and is made available under the [CC-BY-NC 4.0 International License](https://creativecommons.org/licenses/by-nc/4.0/). The surface meshes were copied from <https://jefferis.github.io/elmr/reference/FAFB.surf.html>.

Paper: <a href="https://doi.org/10.1016/j.cell.2018.06.019" target="_blank">Zhihao Zheng et al. "A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster" Cell 174.3 (2018): 730-743.</a>

# Supported data sources

Neuroglancer itself is purely a client-side program, but it depends on data being accessible via HTTP in a suitable format. It is designed to easily support many different data sources, and there is existing support for the following data APIs/formats:
Expand Down

0 comments on commit 05adaf3

Please sign in to comment.