add bio gpu demos #509
add bio gpu demos #509
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CI failing? |
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I think the latest |
| "metadata": {}, | ||
| "output_type": "execute_result" | ||
| } | ||
| ], | ||
| "source": [ | ||
| "url1 = 'https://s3-us-west-1.amazonaws.com/graphistry.demo.data/BIOGRID-ALL-3.3.123.tab2.txt.gz'\n", | ||
| "rawdata = pandas.read_table(url1, na_values=['-'], engine='c', compression='gzip')\n", | ||
| "url1 = 'http://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.3.123/BIOGRID-ALL-3.3.123.tab2.zip'\n", |
demos/demos_by_use_case/bio/cpu/chemical_mappings_before_gpu.ipynb
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demos/demos_by_use_case/bio/cpu/chemical_mappings_before_gpu.ipynb
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Can you switch the gist to https://gist.github.com/lmeyerov/61a6a7d5fa0dbe51e786ed52408ac360 |
| "id": "6lK_VrzZT1n7" | ||
| }, | ||
| "source": [ | ||
| "#### get a free api-key at https://www.graphistry.com/" |
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- For raw data, get a free Kaggle account...
- For the GPU-cloud-accelerated visualization step, get a free API key at https://hub.graphistry.com
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put the kaggle account step next to the graphistry account step so clear during setup
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remove collab dependency for kaggle
| "name": "stdout", | ||
| "output_type": "stream", | ||
| "text": [ | ||
| "--2024-07-09 07:23:29-- https://raw.githubusercontent.com/dcolinmorgan/grph/main/PRJNA544527-meta_inf.txt\n", |
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looks like still need to update this one
can now use: https://gist.github.com/lmeyerov/b650f1ef9e56c3f1888ebb009bc5ed46
| "source": [ | ||
| "from google.colab import userdata\n", | ||
| "g_user=userdata.get('g_user')\n", | ||
| "g_pass=userdata.get('g_pass')" |
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in all notebooks, remove colab runtime dependency
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@dcolinmorgan Can we also add a link to something like nb, or nb1+nb2, to the readme.md gallery area with a biogrid link? please keep short / test render to ensure layout doesn't blow out
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