dartR.data

An accessible genetic analysis platform for conservation, ecology and agriculture - dartR.base

Repositories

repo	status
main
dev

Publication:

Zenodo:

Overview

dartR.data stores data used to run examples in dartR.base and other dartRverse packages.

Currently the dartRverse consists of the following packages:

• dartR.base (report, filter and input/output functions, basic popgenomics)
• dartR.data
• dartR.sim (functions to simulate SNP data)
• dartR.spatial (spatial analysis)
• dartR.popgenomics (popgenomics analysis)
• dartR.captive (functions to support analysis around captive breeding)
• dartR.sexlinked

dartR and its packages is a collaboration between the University of Canberra, CSIRO and Diversity Arrays Technology, and is supported with funding from the ACT Priority Investment Program, CSIRO and the University of Canberra.

           

Installation

For a normal install from CRAN use:

install.packages("dartR.data")

For hints and how to install github versions, check the help pages of the dartRverse package.

Contribute

If you want to help shape the future of dartR, this tutorial is for you.

Citation

Please acknowledge dartR if you use it in your study. Copy and paste the following code to the R console to retrieve the citation information:

citation("dartR.data")
#> 
#> To cite dartR in publications use:
#> 
#>   Gruber, B, Unmack, PJ, Berry, OF, Georges, A. (2018). dartr: An r
#>   package to facilitate analysis of SNP data generated from reduced
#>   representation genome sequencing. Molecular Ecology Resources 18:
#>   691-699. https://doi.org/10.1111/1755-0998.12745
#> 
#>   Mijangos, J. L., Gruber, B., Berry, O., Pacioni, C., & Georges, A.
#>   (2022). dartR v2: An accessible genetic analysis platform for
#>   conservation, ecology and agriculture. Methods in Ecology and
#>   Evolution, (early access). https://doi.org/10.1111/2041-210X.13918
#> 
#> To see these entries in BibTeX format, use 'print(<citation>,
#> bibtex=TRUE)', 'toBibtex(.)', or set
#> 'options(citation.bibtex.max=999)'.

Check out our articles and our awards.

Have fun working with dartR!

Cheers,

Bernd, Arthur, Luis, Carlo & Olly