manual-references.json

[
  {
    "id": "url:https://www.niso.org/publications/z3996-2019-jats",
    "type": "report",
    "URL": "https://www.niso.org/publications/z3996-2019-jats",
    "title": "ANSI/NISO Z39.96-2019, JATS: Journal Article Tag Suite, version 1.2",
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    "id": "url:https://elifesciences.org/for-the-press/e6038800/elife-supports-development-of-open-technology-stack-for-publishing-reproducible-manuscripts-online",
    "URL": "https://elifesciences.org/for-the-press/e6038800/elife-supports-development-of-open-technology-stack-for-publishing-reproducible-manuscripts-online",
    "title": "eLife supports development of open technology stack for publishing reproducible manuscripts online",
    "container-title": "eLife Press Pack",
    "author": [
      {
        "given": "Emily",
        "family": "Packer"
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      {
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        "given": "Michael"
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      "date-parts": [
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          8,
          25
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      ]
    },
    "abstract": "Report detailing work done in the Greene Lab at the University of Pennsylvania for the Summer of 2017. Sparse mat.53465rix implementation of degree-weighted path count (DWPC) over a heterogeneous network of biomedical information. Summer research conducted as part of the Penn Vagelos Scholars Program in Molecular Life Science (MLS).",
    "DOI": "10.6084/m9.figshare77",
    "publisher": "Figshare",
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    "URL": "https://doi.org/gbr3pf"
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    "title": "Open science and open science",
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      {
        "family": "Ehmke",
        "given": "Coraline Ada"
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    "title": "The HoTT book",
    "container-title": "Mathematics and Computation",
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          6,
          20
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        "given": "Andrej"
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    "id": "url:https://homotopytypetheory.org/book/",
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    "title": "Homotopy Type Theory: Univalent Foundations of Mathematics",
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    "author": [
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        "literal": "The Univalent Foundations Program"
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  {
    "id": "url:http://blogs.nature.com/naturejobs/2018/02/20/techblog-manubot-powers-a-crowdsourced-deep-learning-review/",
    "URL": "http://blogs.nature.com/naturejobs/2018/02/20/techblog-manubot-powers-a-crowdsourced-deep-learning-review/",
    "title": "TechBlog: ‘Manubot’ powers a crowdsourced ‘deep-learning’ review",
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          2018,
          2,
          20
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        "given": "Jeffrey",
        "family": "Perkel"
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    "id": "url:http://blogs.nature.com/naturejobs/2017/05/03/techblog-create-the-perfect-bibliography-with-the-csl-editor/",
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    "title": "TechBlog: Create the perfect bibliography with the CSL Editor",
    "container-title": "Naturejobs",
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          5,
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    "URL": "https://busy.org/@dhimmel/how-i-used-the-manubot-to-reproduce-the-bitcoin-whitepaper",
    "title": "How I used the Manubot to reproduce the Bitcoin Whitepaper",
    "container-title": "Steem",
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          2017,
          9,
          20
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        "given": "Daniel",
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    "id": "url:http://blogs.nature.com/naturejobs/2017/06/01/techblog-c-titus-brown-predicting-the-paper-of-the-future",
    "URL": "http://blogs.nature.com/naturejobs/2017/06/01/techblog-c-titus-brown-predicting-the-paper-of-the-future/",
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          6,
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    "type": "webpage",
    "id": "url:http://blog.martinfenner.org/2014/03/10/continuous-publishing/",
    "URL": "http://blog.martinfenner.org/2014/03/10/continuous-publishing/",
    "title": "Continuous Publishing",
    "container-title": "Gobbledygook",
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          2014,
          3,
          10
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    "author": [
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        "given": "Martin",
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  {
    "type": "webpage",
    "id": "url:https://idyll.pub/post/announcing-idyll-pub-0a3eff0661df3446a915700d/",
    "URL": "https://idyll.pub/post/announcing-idyll-pub-0a3eff0661df3446a915700d/",
    "title": "Announcing idyll.pub",
    "container-title": "Idyll",
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          2018,
          6,
          26
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      ]
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        "given": "Matthew",
        "family": "Conlen"
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      {
        "given": "Andrew",
        "family": "Osheroff"
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  {
    "type": "personal_communication",
    "id": "raw:dongbo-conversation",
    "title": "Conversation with Dongbo Hu regarding how to administer a cloud server",
    "container-title": "Greene Laboratory",
    "location": "University of Pennsylvania",
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        [
          2018,
          12,
          19
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      ]
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  {
    "type": "webpage",
    "id": "url:https://elifesciences.org/labs/c496b8bb/stencila-an-office-suite-for-reproducible-research",
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    "title": "Stencila – an office suite for reproducible research",
    "container-title": "eLife Labs",
    "issued": {
      "date-parts": [
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          2018,
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      ]
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    "author": [
      {
        "given": "Michael",
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      {
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        "family": "Pawlik"
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      {
        "given": "Nokome",
        "family": "Bentley"
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  {
    "id": "doi:10.17226/25116",
    "type": "book",
    "DOI": "10.17226/25116",
    "title": "Open Science by Design: Realizing a Vision for 21st Century Research",
    "author": [
      {"literal": "National Academies of Sciences, Engineering, and Medicine"}
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      "date-parts": [
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          2018,
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    "publisher": "National Academies Press",
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    "type": "post-weblog",
    "id": "url:https://petertodd.org/2016/opentimestamps-announcement",
    "title": "OpenTimestamps: Scalable, Trust-Minimized, Distributed Timestamping with Bitcoin",
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    "author": [
      {
        "given": "Peter",
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    "container-title": "Peter Todd",
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      "date-parts": [
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          2016,
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    "type": "post-weblog",
    "id": "url:http://ivory.idyll.org/blog/2019-authorship-revisiting.html",
    "title": "Revisiting authorship, and JOSS software publications",
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        "given": "C. Titus",
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    "container-title": "Living in an Ivory Basement",
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    "type": "post-weblog",
    "title": "Proof of prespecified endpoints in medical research with the bitcoin blockchain",
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    "container-title": "The Grey Literature",
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    "author": [
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        "given": "Benjamin Gregory",
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    "type": "post-weblog",
    "title": "Introducing eLife’s first computationally reproducible article",
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        "given": "Michael",
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        "given": "Nokome",
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      "date-parts": [
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    "title": "Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution",
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    "container-title": "G3: Genes|Genomes|Genetics",
    "container-title-short": "G3",
    "issue": "5",
    "volume": "5",
    "page": "719-740",
    "publisher": "Genetics Society of America",
    "source": "Crossref",
    "language": "en",
    "issued": {
      "date-parts": [
        [
          2015,
          3,
          4
        ]
      ]
    },
    "URL": "https://doi.org/gfw5vf",
    "DOI": "10.1534/g3.114.015966",
    "PMCID": "PMC4426361",
    "PMID": "25740935"
  }
]