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.gitignore
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.gitignore
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# Ignore hidden metadata files
._*
# History files
.Rhistory
.Rapp.history
# Session Data files
.RData
# Output files from R CMD check
/*.Rcheck/
# RStudio files
.Rproj.user/
# knitr and R markdown default cache directories
/*_cache/
/cache/
# Temporary files created by R markdown
*.utf8.md
*.knit.md
# Rplot default output
Rplots.pdf
# recount2 data from figshare
data/recount2_PLIER_data
# other data from greenelab/rheum-plier-data
data/expression_data/E-MTAB-2452_hugene11st_SCANfast.pcl
data/expression_data/GSE18885_series_matrix.txt
data/expression_data/NARES_SCANfast_ComBat.pcl
data/expression_data/SLE_WB_all_microarray_QN_zto_before.pcl
data/sample_info/E-GEOD-39088.sdrf.txt
data/sample_info/E-GEOD-65391.sdrf.txt
data/sample_info/E-GEOD-78193.sdrf.txt
data/sample_info/E-MTAB-2452.sdrf.txt
data/sample_info/NARES_demographic_data.tsv
data/sample_info/sle-wb_sample_dataset_mapping.tsv
# private kidney data
data/kidney/