GitHub - grenaud/VCFparser: C++ library for parsing VCF files

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
gzstream		gzstream
23andme2mistar.cpp		23andme2mistar.cpp
AlleleInfo.cpp		AlleleInfo.cpp
AlleleInfo.h		AlleleInfo.h
AlleleInfoReader.cpp		AlleleInfoReader.cpp
AlleleInfoReader.h		AlleleInfoReader.h
BAMTABLEreader.cpp		BAMTABLEreader.cpp
BAMTABLEreader.h		BAMTABLEreader.h
BAMTableObj.cpp		BAMTableObj.cpp
BAMTableObj.h		BAMTableObj.h
CoreVCF.cpp		CoreVCF.cpp
CoreVCF.h		CoreVCF.h
FastQObj.cpp		FastQObj.cpp
FastQObj.h		FastQObj.h
FastQParser.cpp		FastQParser.cpp
FastQParser.h		FastQParser.h
FilterVCF.cpp		FilterVCF.cpp
FilterVCF.h		FilterVCF.h
Makefile		Makefile
MultiVCFreader.cpp		MultiVCFreader.cpp
MultiVCFreader.h		MultiVCFreader.h
README		README
ReadTabix.cpp		ReadTabix.cpp
ReadTabix.h		ReadTabix.h
SetVCFFilters.cpp		SetVCFFilters.cpp
SetVCFFilters.h		SetVCFFilters.h
SimpleVCF.cpp		SimpleVCF.cpp
SimpleVCF.h		SimpleVCF.h
TODO		TODO
VCFreader.cpp		VCFreader.cpp
VCFreader.h		VCFreader.h
affyVCF2mistar.cpp		affyVCF2mistar.cpp
bamtable2mistar.cpp		bamtable2mistar.cpp
filterVCF.cpp		filterVCF.cpp
mergeBAMTable.cpp		mergeBAMTable.cpp
testMultiReadTabix.cpp		testMultiReadTabix.cpp
testReadFastq.cpp		testReadFastq.cpp
testReadTabix.cpp		testReadTabix.cpp
testVCF.cpp		testVCF.cpp
vcf2mistar.cpp		vcf2mistar.cpp
vcfMulti2mistar.cpp		vcfMulti2mistar.cpp

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VCFparser is a small C++ library for parsing VCF files, fast[aq] files and Bamtable files. It can filter VCF files and generate treemix input from VCF files.



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