GitHub - grenaud/libbam: Library of various programs based on bamtools

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Name		Name	Last commit message	Last commit date
Latest commit History 38 Commits
Makefile		Makefile
README		README
addFFtomakeUdosDamagePatternHappy.cpp		addFFtomakeUdosDamagePatternHappy.cpp
addRG.cpp		addRG.cpp
addRGInReadAndHeader.cpp		addRGInReadAndHeader.cpp
addRG_CTEAM.cpp		addRG_CTEAM.cpp
addRGinHeaderHack.cpp		addRGinHeaderHack.cpp
allFailqc.cpp		allFailqc.cpp
allNoDUPRM.cpp		allNoDUPRM.cpp
allPassqc.cpp		allPassqc.cpp
bamCat.cpp		bamCat.cpp
baseQualScorePerCycle.cpp		baseQualScorePerCycle.cpp
compareRG.cpp		compareRG.cpp
crossSampleStat.cpp		crossSampleStat.cpp
cutDeaminated.cpp		cutDeaminated.cpp
cutEndKeepBeginning.cpp		cutEndKeepBeginning.cpp
cutReadsDistribution.cpp		cutReadsDistribution.cpp
cutStart.cpp		cutStart.cpp
cutUMI.cpp		cutUMI.cpp
decrQualDeaminated.cpp		decrQualDeaminated.cpp
decrQualDeaminatedDoubleStranded.cpp		decrQualDeaminatedDoubleStranded.cpp
decrQualNs.cpp		decrQualNs.cpp
detectUMIvarLength.cpp		detectUMIvarLength.cpp
dumpLoneMates.cpp		dumpLoneMates.cpp
editDist.cpp		editDist.cpp
errorQCScores.cpp		errorQCScores.cpp
errorRate.cpp		errorRate.cpp
failQualPair.cpp		failQualPair.cpp
filterDeaminated.cpp		filterDeaminated.cpp
filterDeaminatedDouble.cpp		filterDeaminatedDouble.cpp
filterDeaminatedFasta.cpp		filterDeaminatedFasta.cpp
filterDeaminatedVCF.cpp		filterDeaminatedVCF.cpp
filterDeaminatedVCFpreload.cpp		filterDeaminatedVCFpreload.cpp
filterDeaminatedVCFpreload1000g.cpp		filterDeaminatedVCFpreload1000g.cpp
filterDeaminatedpreload1000g.cpp		filterDeaminatedpreload1000g.cpp
filterEditDist.cpp		filterEditDist.cpp
filterHighEditDistance.cpp		filterHighEditDistance.cpp
filterNoNonDNAbase.cpp		filterNoNonDNAbase.cpp
filterOnlyThoseWithRG.cpp		filterOnlyThoseWithRG.cpp
fixMates.cpp		fixMates.cpp
insertSize.cpp		insertSize.cpp
readWhereEitherIsMapped.cpp		readWhereEitherIsMapped.cpp
removeIndices.cpp		removeIndices.cpp
removeRG.cpp		removeRG.cpp
removeTagsMapping.cpp		removeTagsMapping.cpp
removeThoseWithoutMD.cpp		removeThoseWithoutMD.cpp
removeUnalignedANDWrongCigar.cpp		removeUnalignedANDWrongCigar.cpp
replaceRG.cpp		replaceRG.cpp
retrieveMappedCertainIsize.cpp		retrieveMappedCertainIsize.cpp
retrieveMapped_single_and_ProperlyPair.cpp		retrieveMapped_single_and_ProperlyPair.cpp
retrieveMapped_single_and_ProperlyPair_NoPCR.cpp		retrieveMapped_single_and_ProperlyPair_NoPCR.cpp
retrieveRG.cpp		retrieveRG.cpp
retrieveReadsWithName.cpp		retrieveReadsWithName.cpp
setAsUnpaired.cpp		setAsUnpaired.cpp
singleAndFirstMate.cpp		singleAndFirstMate.cpp
splitByChr.cpp		splitByChr.cpp
splitByRG.cpp		splitByRG.cpp
subSampleBAM.cpp		subSampleBAM.cpp
subsamplebamFixedNumber.cpp		subsamplebamFixedNumber.cpp
subsamplebamFixedNumberCollate.cpp		subsamplebamFixedNumberCollate.cpp
subsamplebamFixedNumberPair.cpp		subsamplebamFixedNumberPair.cpp
subsamplebamFixedNumberSingleFirstMate.cpp		subsamplebamFixedNumberSingleFirstMate.cpp
sumBases.cpp		sumBases.cpp
tallyByRG.cpp		tallyByRG.cpp
transBAM.cpp		transBAM.cpp
transBAMperRead.cpp		transBAMperRead.cpp

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Various programs I wrote with bamtools.

Gabriel Renaud gabriel.reno [at sign here ] gmail.com

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Library of various programs based on bamtools

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