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datatables_spec.rb
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datatables_spec.rb
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require 'rails_helper'
describe EvidenceItemsController do
it 'should return an accepted evidence item' do
evidence_item = Fabricate(:evidence_item, status: 'accepted')
get :datatable
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item.id
end
it 'should filter on evidence_level' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', evidence_level: 'A')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted', evidence_level: 'B')
get :datatable, params: { filter: {evidence_level: 'A'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
it 'should filter on evidence_type' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', evidence_type: 'Diagnostic')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted', evidence_type: 'Prognostic')
get :datatable, params: { filter: {evidence_type: 'Diagnostic'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
it 'should filter on evidence_direction' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', evidence_direction: 'Supports')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted', evidence_direction: 'Does Not Support')
get :datatable, params: { filter: {evidence_direction: 'Supports'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
it 'should filter on clinical_significance' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', clinical_significance: 'Resistance')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted', clinical_significance: 'Negative')
get :datatable, params: { filter: {clinical_significance: 'Resistance'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
it 'should filter on variant_origin' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', variant_origin: 'Somatic')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted', variant_origin: 'Rare Germline')
get :datatable, params: { filter: {variant_origin: 'Somatic'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
it 'should filter on rating' do
evidence_item_A = Fabricate(:evidence_item, status: 'accepted', rating: '1')
evidence_item_B = Fabricate(:evidence_item, status: 'accepted',rating: '2')
get :datatable, params: { filter: {rating: '1'} }
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq evidence_item_A.id
end
end
describe GenesController do
it 'should return a gene' do
gene = Fabricate(:gene)
variant = Fabricate(:variant, :gene => gene)
Fabricate(:evidence_item, variant: variant, status: 'accepted')
get :datatable
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['id']).to eq gene.id
end
end
describe VariantsController do
it 'should return a variant' do
variant = Fabricate(:variant)
evidence_item = Fabricate(:evidence_item, variant: variant, status: 'accepted')
get :datatable
result = JSON.parse(response.body)
expect(result['result'].length).to eq 1
expect(result['result'][0]['variant_id']).to eq variant.id
end
end