Version 0.2.0 #62
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Version 0.2.0 #62
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Refactor configuration
* Configure conda installation * Refactor the project code to be a package * Add pylint dependency * Remove flake8 configuration from setup.cfg * Import the version as __version__ attribute in the package * Ignore the _version.py file
* Add pyproject file to configure python tools * Add editorconfig file to standardize the editors * Add PyLint configuration * Add .flake8 configuration file * Remove PyLint configuration * Add pydocstyle configuration * Update isort configuration * Add bandit configuration * Add pre-commit configuration * pre-commit configuration updated. Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Remove the PROJECT_ROOT env variable and infer it Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Disable hydra logging auto-configuration * Add logging pretty printing * Force logging configuration before pytorch lightning See Lightning-AI/pytorch-lightning#1503 * Enable exceptions pretty printing
* Enable pin-memory if not on CPU * Updated pin_memory policy to consider all "Trainer.gpus" data types. Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
Simplify the mwe included in the template
* Log the code used in the current experiment to wandb * Improve files filtering when uploading the code to wandb
Functionalities decoupling via external library (nn-core).
* Disable pytest coverage uncompatible with PyCharm See: - https://stackoverflow.com/questions/40718760/unable-to-debug-in-pycharm-with-pytest - https://youtrack.jetbrains.com/issue/PY-20186 * Update coverage configuration to ignore unreachable code * Avoid executing the model test in fast_dev_run mode * Add conftest to define basic configurations and training * Add tests to validate configuration * Add train loop tests * Optimize fixture scoping * Update template to be compatible with the tests * Reorganize conftest fixtures * Test the configuration is correctly stored on the storage folder * Test the checkpoint are correctly saved in the storage * Test the checkpoint can be loaded * Test the configuration is stored in the checkpoint * Rename test_resume into test_checkpoint * Test on save checkpoint monkey patching * Test PROJECT_ROOT resolution * Test train loop in different regimens * New fast_dev_run variable. * Let's not forget the important things. Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Remove unnecessary on save checkpoint hook injection * Test the run path is stored in the checkpoint * Implement resume logic * Test resume behaviour * Refactor resume with semantic options
* Refactor NNLogger usages * Move NNTemplateCore callback from configuration to code
* Add github workflow to run pre-commits and tests - Temporary change the nn-template-core to a git dependency - Python 3.7 not supported - Remove python dependency from environment * Add publish workflow to deploy docs on release * Update on condition of the Test Suite * Add cache names * Pin setuptools version * Pin PyTorch version * Fix nn_template import * Downgrade setuptools https://stackoverflow.com/questions/70520120/attributeerror-module-setuptools-distutils-has-no-attribute-version pytorch/pytorch#69904 * Remove nn-template-core git dependency * Add on push trigger for main and develop branches
Remove some trigger from the Test Suite workflow
Remove requirements.txt not necessary
Pre-initialize LICENSE correctly
* Add missing docstrings * Fix pre-commit errors * Update MetaData docstring Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Add dynamic badges for tests, docs and nn-core version * Remove unnecessary information in the README * Update README * Update structure in README * Update checks badges Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Add docs with mkdocs, material for mkdocs and mike * Add Action to publish docs on release * Update docs homepage * Delete requirements.txt Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
* Fix cache keys hashfiles * Add cache keys echoing * Move cache key generation after project generation * Remove leading dot in conda env file
* Add a DAG in the post hook interactive setup * Add pytest into suggested commands * Initialize gh-pages branch in the post hook * Remove mike set-default in ci/cd since it's set in post hook * Improve "remember to" message * Always in autorun if in interactive mode * Improve git remote prompt
* Fix remote parametrization in the README * Fix git remote parametrization * Add cd command in develop setup
* Add Publications section in documentation * Clean up documentation for release * Update README.md Co-authored-by: Valentino Maiorca <valentino@maiorca.xyz>
lucmos
approved these changes
Mar 1, 2022
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