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ahrd_input_test_run.yml
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ahrd_input_test_run.yml
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proteins_fasta: ./test/resources/proteins.fasta
blast_dbs:
swissprot:
weight: 100
file: ./test/resources/swissprot.pairwise
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_sprot.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.2
tair:
weight: 50
file: ./test/resources/tair.pairwise
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_tair.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.4
trembl:
weight: 10
file: ./test/resources/trembl.pairwise
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_trembl.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.4
interpro_database: ./test/resources/interpro_31.xml
interpro_result: ./test/resources/interpro_result.raw
gene_ontology_result: ./test/resources/go_results.csv
token_score_bit_score_weight: 0.5
token_score_database_score_weight: 0.3
token_score_overlap_score_weight: 0.2
output: ./test/ahrd_output.csv