Update to jamesdemodata 0.10.0

growthcharts · Jun 11, 2023 · 56cb9d0 · 56cb9d0
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7 +5,7 @@ Author: Stef van Buuren
 Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
 Description: A collection of data sets to develop, test and demonstrate the 
     Joint Automatic Measurement and Evaluation System (JAMES). 
-Version: 0.9.0
+Version: 0.10.0
 Encoding: UTF-8
 License: AGPL (>= 3)
 Copyright: Stef van Buuren 2021

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,8 @@
+# jamesdemodata 0.10.0
+
+- Regenerates example and test files from `bdsreader` and `donorloader`
+- Corrects problem with gestational ages in lollypop data
+
 # jamesdemodata 0.9.0
 
 - Manually: Make fields "organisationCode" and "Reference" conform to the V3.0 schema

diff --git a/README.Rmd b/README.Rmd
@@ -35,17 +35,17 @@ remotes::install_github("growthcharts/jamesdemodata")
 
 Test- en demo data are stored in the `inst/extdata` directory. In order to generate a file name of the SMOCC child Laura S use 
 
-```{r eval=FALSE}
-fn <- system.file("extdata", "bds_v2.0", "smocc", "Laura_S.json", package = "jamesdemodata")
+```{r}
+fn <- system.file("extdata", "bds_v3.0", "smocc", "Laura_S.json", package = "jamesdemodata")
 ```
 
 Read the data into R using the `bdsreader` package:
 
-```{r eval=FALSE}
+```{r}
 library(bdsreader)
 tgt <- read_bds(fn)
-head(tgt)
 persondata(tgt)
+timedata(tgt)
 ```
 
 See <https://github.com/growthcharts/bdsreader> for installation notes of `bdsreader`.

diff --git a/README.md b/README.md
@@ -29,17 +29,42 @@ Test- en demo data are stored in the `inst/extdata` directory. In order
 to generate a file name of the SMOCC child Laura S use
 
 ``` r
-fn <- system.file("extdata", "bds_v2.0", "smocc", "Laura_S.json", package = "jamesdemodata")
+fn <- system.file("extdata", "bds_v3.0", "smocc", "Laura_S.json", package = "jamesdemodata")
 ```
 
 Read the data into R using the `bdsreader` package:
 
 ``` r
 library(bdsreader)
 tgt <- read_bds(fn)
-head(tgt)
 persondata(tgt)
 ```
 
+    ## # A tibble: 1 × 16
+    ##      id name    dob        dobf   dobm       src   dnr   sex      gad    ga
+    ##   <int> <chr>   <date>     <date> <date>     <chr> <chr> <chr>  <dbl> <dbl>
+    ## 1    -1 Laura S 1989-01-21 NA     1961-07-22 0     <NA>  female   276    39
+    ## # ℹ 6 more variables: smo <int>, bw <dbl>, hgtm <dbl>, hgtf <dbl>, agem <dbl>,
+    ## #   etn <chr>
+
+``` r
+timedata(tgt)
+```
+
+    ## # A tibble: 58 × 8
+    ##      age xname yname zname zref                      x     y      z
+    ##    <dbl> <chr> <chr> <chr> <chr>                 <dbl> <dbl>  <dbl>
+    ##  1 0     age   hgt   hgt_z nl_1997_hgt_female_nl 0     48    -1.52 
+    ##  2 0     age   wgt   wgt_z nl_1997_wgt_female_nl 0      2.95 -1.06 
+    ##  3 0     age   bmi   bmi_z nl_1997_bmi_female_nl 0     12.8   0.259
+    ##  4 0.101 age   hgt   hgt_z nl_1997_hgt_female_nl 0.101 53.5  -0.499
+    ##  5 0.101 age   wgt   wgt_z nl_1997_wgt_female_nl 0.101  4.18 -0.162
+    ##  6 0.101 age   hdc   hdc_z nl_1997_hdc_female_nl 0.101 37.6   0.418
+    ##  7 0.101 age   bmi   bmi_z nl_1997_bmi_female_nl 0.101 14.6   0.231
+    ##  8 0.101 age   dsc   dsc_z ph_2023_dsc_female_40 0.101 14.8  -0.321
+    ##  9 0.159 age   hgt   hgt_z nl_1997_hgt_female_nl 0.159 56    -0.261
+    ## 10 0.159 age   wgt   wgt_z nl_1997_wgt_female_nl 0.159  5     0.401
+    ## # ℹ 48 more rows
+
 See <https://github.com/growthcharts/bdsreader> for installation notes
 of `bdsreader`.