lightweight C implementation of name collating BAM file input and BAM file output
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README.md

bambamc

This package contains mainly a lightweight C implementation of the read name collation code from the larger libmaus/biobambam C++ project.

The github repository does not contain the final configure script but only the source files passed to autoconf/automake. Please use

autoreconf -i -f

to obtain a set of working configuration scripts.

The library can then be compiled using

./configure
make

and installed using

make install

Installation may require root privileges.

An alternative installation path can be set using

./configure --prefix=/path/to/installation