TDF-SDK throws error in Linux

[gtluu]

`>>>>>>>>|- ERROR in [bdal-logconf:logger_config.cpp:430] - XML analysis error: The resulting configuration is unusable - Falling back to default configuration:
Dynamic exception type: std::bad_cast
std::exception::what: std::bad_cast

terminate called after throwing an instance of 'boost::interprocess::interprocess_exception'
what(): boost::interprocess::intermodule_singleton initialization failed
.command.sh: line 3: 79273 Aborted`

The following error occurs when running TIMSCONVERT in Linux using Nextflow or as a CLI application. The error is not present in when using TIMSCONVERT as a CLI application on Windows. We suspect the issue is caused by an error in timsdata.so which is absent in timsdata.dll, hence the lack of errors in Windows environments.

[gtluu]

Update: This issue is most likely caused by the use of certain versions of the Boost C++ library in C++ that do not appear to work well with Linux compilers. The issue needs to be fixed in the TDF-SDK library source code. A workaround for now is to use Python 3.7 when creating your conda venv.

[gtluu]

This appears to have been fixed as of 62ef7b2

TIMSCONVERT 1.5.0 was tested on Python 3.11.5 installed with Anaconda 2023.7-2 on Windows 10 22H2 and Ubuntu 22.04.3 LTS.