Analysis code for the manuscript 'Patterns of within-host genetic diversity in SARS-CoV-2'

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
Figures		Figures
Supplementary		Supplementary
data		data
shearwater_variant_calling_scripts		shearwater_variant_calling_scripts
README.md		README.md
consensus_analysis_3.Rmd		consensus_analysis_3.Rmd
consensus_analysis_3.html		consensus_analysis_3.html
delta_statistic.R		delta_statistic.R
minority_variant_analysis_3.Rmd		minority_variant_analysis_3.Rmd
minority_variant_analysis_3.html		minority_variant_analysis_3.html
plotspectra_96_192.R		plotspectra_96_192.R
withinhost_diversity_analyses_manuscript.v2.Rmd		withinhost_diversity_analyses_manuscript.v2.Rmd
withinhost_diversity_analyses_manuscript.v2.html		withinhost_diversity_analyses_manuscript.v2.html

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