Scripts for my doctoral thesis: Search for new therapeutic targets for breast cancer molecular subtypes.
#####microarray_normalization.R : normalize microarray data using frma and batch correction #####parker_pam50.R : annotated script to run PAM50 on breast cancer samples as described by Parker et al. #####citbcmst.R : annotated script to run citbcsmt on breast cancer samples as described by Marisa et al. #####gage.R : Analyzing pathway deregulation using Generally Applicable Geneset Enrichment. #####jaccard_matrix.R : construction of a pathway crosstalk network as described in de Anda - Jáuregui et al (2015). #####dgidb.R : mining tool for DGIdb.