Automated CRAN import 2024-03-25

Compatible with the following channels:

(list (channel
        (name 'guix)
        (url "https://git.savannah.gnu.org/git/guix.git")
        (branch "master")
        (commit "a6fc564bcc32ba599fc701f340c2d59c47bb225b")
        (introduction
         (make-channel-introduction "9edb3f66fd807b096b48283debdcddccfea34bad"
          (openpgp-fingerprint
           "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA")))))

guix-cran/packages/b.scm

@@ -5925,13 +5925,13 @@ Koopmeiners, & Hobbs (2018) <doi:10.1093/biostatistics/kxx031>.")
 (define-public r-boral
   (package
     (name "r-boral")
-    (version "2.0.1")
+    (version "2.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "boral" version))
        (sha256
-        (base32 "1djsxhjdaj7z69l1y612vvqxvyl74fk3skncd8knpzsf5ks01sc7"))))
+        (base32 "1x53g3y283i92624rkp36lwfmz0p8rkkqsndn5h35sapjga6wmy3"))))
     (properties `((upstream-name . "boral")))
     (build-system r-build-system)
     (propagated-inputs (list r-reshape2

guix-cran/packages/c.scm

@@ -34799,26 +34799,6 @@ values.")
 absorption spectra of chromophoric dissolved organic matter (CDOM).")
     (license license:gpl2+)))
 
-(define-public r-cdnmoney
-  (package
-    (name "r-cdnmoney")
-    (version "2012.4-2")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "CDNmoney" version))
-       (sha256
-        (base32 "1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"))))
-    (properties `((upstream-name . "CDNmoney")))
-    (build-system r-build-system)
-    (home-page "https://cran.r-project.org/package=CDNmoney")
-    (synopsis "Components of Canadian Monetary and Credit Aggregates")
-    (description
-     "Components of Canadian Credit Aggregates and Monetary Aggregates with continuity
-adjustments.")
-    (license (list license:gpl2
-                   (license:fsdg-compatible "file://LICENSE")))))
-
 (define-public r-cdmtools
   (package
     (name "r-cdmtools")

guix-cran/packages/d.scm

@@ -5628,30 +5628,6 @@ at some parametric values of several well-known and extensively used probability
 distributions.")
     (license license:gpl2)))
 
-(define-public r-dprint
-  (package
-    (name "r-dprint")
-    (version "0.0.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "dprint" version))
-       (sha256
-        (base32 "13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"))))
-    (properties `((upstream-name . "dprint")))
-    (build-system r-build-system)
-    (home-page "https://cran.r-project.org/package=dprint")
-    (synopsis "Print Tabular Data to Graphics Device")
-    (description
-     "This package provides a generalized method for printing tabular data within the
-R environment in order to make the process of presenting high quality tabular
-output seamless for the user.  Output is directed to the R graphics device so
-that tables can be exported to any file format supported by the graphics device.
- Utilizes a formula interface to specify the contents of tables often found in
-manuscripts or business reports.  In addition, formula interface provides inline
-formatting of the numeric cells of a table and renaming column labels.")
-    (license license:gpl2+)))
-
 (define-public r-dpqmpfr
   (package
     (name "r-dpqmpfr")

guix-cran/packages/e.scm

@@ -5569,30 +5569,6 @@ and option chains.  A user will need an ETRADE brokerage account and ETRADE API
 approval.  See README for authentication process and examples.")
     (license license:gpl3)))
 
-(define-public r-etma
-  (package
-    (name "r-etma")
-    (version "1.1-1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "etma" version))
-       (sha256
-        (base32 "0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"))))
-    (properties `((upstream-name . "etma")))
-    (build-system r-build-system)
-    (native-inputs (list r-knitr))
-    (home-page "https://cran.r-project.org/package=etma")
-    (synopsis "Epistasis Test in Meta-Analysis")
-    (description
-     "Traditional meta-regression based method has been developed for using
-meta-analysis data, but it faced the challenge of inconsistent estimates.  This
-package purpose a new statistical method to detect epistasis using incomplete
-information summary, and have proven it not only successfully let consistency of
-evidence, but also increase the power compared with traditional method (Detailed
-tutorial is shown in website).")
-    (license license:gpl3+)))
-
 (define-public r-etlutils
   (package
     (name "r-etlutils")
@@ -15079,15 +15055,16 @@ topology.")
 (define-public r-eicircles
   (package
     (name "r-eicircles")
-    (version "0.0.1-6")
+    (version "0.0.1-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "eiCircles" version))
        (sha256
-        (base32 "17myh4acljhzq3p3da7h99l3qga362f1fkkask1n6vxqn6p4iy1s"))))
+        (base32 "11id675g2j36xq8c1fmsbh7djbcdgbyvq0hrnhahsmiy1nnrxncd"))))
     (properties `((upstream-name . "eiCircles")))
     (build-system r-build-system)
+    (propagated-inputs (list r-nlcoptim))
     (home-page "https://cran.r-project.org/package=eiCircles")
     (synopsis
      "Ecological Inference of RxC Tables by Overdispersed-Multinomial Models")

guix-cran/packages/f.scm

@@ -19201,30 +19201,6 @@ eventually speed up the computation.  The fitting algorithm for Elastic Net is
 written in C++ using Armadillo linear algebra library.")
     (license license:gpl2+)))
 
-(define-public r-fastdigest
-  (package
-    (name "r-fastdigest")
-    (version "0.6-3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "fastdigest" version))
-       (sha256
-        (base32 "02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"))))
-    (properties `((upstream-name . "fastdigest")))
-    (build-system r-build-system)
-    (home-page "https://cran.r-project.org/package=fastdigest")
-    (synopsis "Fast, Low Memory-Footprint Digests of R Objects")
-    (description
-     "This package provides an R interface to Bob Jenkin's streaming,
-non-cryptographic @code{SpookyHash} hash algorithm for use in digest-based
-comparisons of R objects.  fastdigest plugs directly into R's internal
-serialization machinery, allowing digests of all R objects the serialize()
-function supports, including reference-style objects via custom hooks.  Speed is
-high and scales linearly by object size; memory usage is constant and
-negligible.")
-    (license license:artistic2.0)))
-
 (define-public r-fastcub
   (package
     (name "r-fastcub")

guix-cran/packages/g.scm

@@ -13923,26 +13923,6 @@ Montoya-@code{Blandón} (2023)
 <https://www.smontoyablandon.com/publication/networks/network_externalities.pdf>.")
     (license license:gpl3+)))
 
-(define-public r-giniwegneg
-  (package
-    (name "r-giniwegneg")
-    (version "1.0.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "GiniWegNeg" version))
-       (sha256
-        (base32 "1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"))))
-    (properties `((upstream-name . "GiniWegNeg")))
-    (build-system r-build-system)
-    (home-page "https://cran.r-project.org/package=GiniWegNeg")
-    (synopsis
-     "Computing the Gini-Based Coefficients for Weighted and Negative Attributes")
-    (description
-     "Gini-based coefficients and plot of the ordinary and generalized curve of
-maximum inequality in the presence of weighted and negative attributes.")
-    (license license:gpl3)))
-
 (define-public r-ginivarci
   (package
     (name "r-ginivarci")
@@ -17330,13 +17310,13 @@ themes.")
 (define-public r-gglasso
   (package
     (name "r-gglasso")
-    (version "1.5")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gglasso" version))
        (sha256
-        (base32 "12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"))))
+        (base32 "1gasfhwp74akmqk8c534iyag61r9jznalcjcpgvacnmbnf2irrif"))))
     (properties `((upstream-name . "gglasso")))
     (build-system r-build-system)
     (native-inputs (list r-knitr gfortran))
@@ -25564,27 +25544,44 @@ pathway level analyses.")
 (define-public r-geds
   (package
     (name "r-geds")
-    (version "0.1.4")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "GeDS" version))
        (sha256
-        (base32 "05zmghjcqsnbdyvc2v2hfzj9ymr9m90rhjlryxdf3bdmjarh8l57"))))
+        (base32 "0qf4yah7nhjn8qwifr6irgv3iqll3rrf5c9kz90z2ny6c3wh04sg"))))
     (properties `((upstream-name . "GeDS")))
     (build-system r-build-system)
-    (propagated-inputs (list r-rmpfr r-rcpp r-matrix))
+    (propagated-inputs (list r-th-data
+                             r-rmpfr
+                             r-rcpp
+                             r-plot3d
+                             r-mboost
+                             r-matrix
+                             r-mass
+                             r-future
+                             r-foreach
+                             r-dorng
+                             r-doparallel
+                             r-dofuture))
     (home-page "https://github.com/emilioluissaenzguillen/GeDS")
     (synopsis "Geometrically Designed Spline Regression")
     (description
-     "Geometrically Designed Spline ('@code{GeDS}') Regression is a non-parametric
-geometrically motivated method for fitting variable knots spline predictor
-models in one or two independent variables, in the context of generalized
-(non-)linear models. @code{GeDS} estimates the number and position of the knots
-and the order of the spline, assuming the response variable has a distribution
-from the exponential family.  A description of the method can be found in
-Kaishev et al. (2016) <doi:10.1007/s00180-015-0621-7> and Dimitrova et al.
-(2017) <https://openaccess.city.ac.uk/id/eprint/18460/>.")
+     "Spline Regression, Generalized Additive Models, and Component-wise Gradient
+Boosting, utilizing Geometrically Designed (@code{GeD}) Splines. @code{GeDS}
+regression is a non-parametric method inspired by geometric principles, for
+fitting spline regression models with variable knots in one or two independent
+variables.  It efficiently estimates the number of knots and their positions, as
+well as the spline order, assuming the response variable follows a distribution
+from the exponential family. @code{GeDS} models integrate the broader category
+of Generalized (Non-)Linear Models, offering a flexible approach to modeling
+complex relationships.  A description of the method can be found in Kaishev et
+al. (2016) <doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
+<doi:10.1016/j.amc.2022.127493>.  Further extending its capabilities,
+@code{GeDS's} implementation includes Generalized Additive Models (GAM) and
+Functional Gradient Boosting (FGB), enabling versatile multivariate predictor
+modeling, as discussed in the forthcoming work of Dimitrova et al. (2024).")
     (license license:gpl3)))
 
 (define-public r-gecko

guix-cran/packages/h.scm

@@ -5481,28 +5481,6 @@ van Valkenhoef, G., Basturk, N., and Postmus, D. (2012)
 Postmus, D. (2014) <doi:10.1016/j.ejor.2014.06.036>.")
     (license license:gpl3)))
 
-(define-public r-histry
-  (package
-    (name "r-histry")
-    (version "0.2.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "histry" version))
-       (sha256
-        (base32 "01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"))))
-    (properties `((upstream-name . "histry")))
-    (build-system r-build-system)
-    (propagated-inputs (list r-roprov r-fastdigest r-evaluate r-codedepends))
-    (native-inputs (list r-knitr))
-    (home-page "https://cran.r-project.org/package=histry")
-    (synopsis
-     "Enhanced Command History Tracking for R Sessions and Dynamic Documents")
-    (description
-     "Automatically tracks and makes programmatically available code evaluation
-history in R sessions and dynamic documents.")
-    (license license:artistic2.0)))
-
 (define-public r-histoslider
   (package
     (name "r-histoslider")
@@ -6930,25 +6908,6 @@ two-factor studies.  Produces corresponding interaction plot and analysis of
 variance tables and p-values from several other tests of non-additivity.")
     (license license:gpl2)))
 
-(define-public r-hicseg
-  (package
-    (name "r-hicseg")
-    (version "1.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "HiCseg" version))
-       (sha256
-        (base32 "19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"))))
-    (properties `((upstream-name . "HiCseg")))
-    (build-system r-build-system)
-    (home-page "https://cran.r-project.org/package=HiCseg")
-    (synopsis "Detection of domains in HiC data")
-    (description
-     "This package allows you to detect domains in @code{HiC} data by rephrasing this
-problem as a two-dimensional segmentation issue.")
-    (license license:gpl2)))
-
 (define-public r-hicp
   (package
     (name "r-hicp")

guix-cran/packages/k.scm

@@ -2794,13 +2794,13 @@ as probability of exclusion (PE).")
 (define-public r-kinship2
   (package
     (name "r-kinship2")
-    (version "1.9.6")
+    (version "1.9.6.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "kinship2" version))
        (sha256
-        (base32 "1xmvfg6y1a16vp4wy3cil1a10dpnq7rrjbpzys2ri8f2ficvsl01"))))
+        (base32 "0bggc78b3xyz6vczbbqhibn6zxgsw122nzymsndk5nd19yb76nv9"))))
     (properties `((upstream-name . "kinship2")))
     (build-system r-build-system)
     (propagated-inputs (list r-quadprog r-matrix r-knitr))