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@gurdon-institute

Gurdon Institute

Gurdon Institute, University of Cambridge (researching Developmental Biology and Cancer Biology)

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  1. Filopodyan Filopodyan Public

    An ImageJ/R pipeline for filopodia dynamics analysis

    HTML 7 1

  2. HKM-Segment HKM-Segment Public

    Hierarchical K-Means Segmentation

    Java 1

  3. Surrounding_Blobs Surrounding_Blobs Public

    Java 1

  4. Two_Cells Two_Cells Public

    Selects best focussed slice and segments 2 cells from C2 (DIC) in a 5D stack. Segments a nucleus in each cell if one is labelled in C1. Measures C1 mean intensity over time for each cell and nucleus.

    Python 1

  5. Wagner Wagner Public

    Opera data reconstruction

    Java

  6. object_scan object_scan Public

    Murakami K, Gunesdogan U, Zylicz JJ, et al. NANOG alone induces germ cells in primed epiblast in vitro by activation of enhancers. Nature 2016;

    Java

Repositories

Showing 10 of 25 repositories
  • Filopodyan Public

    An ImageJ/R pipeline for filopodia dynamics analysis

    gurdon-institute/Filopodyan’s past year of commit activity
    HTML 7 1 0 0 Updated Feb 5, 2024
  • gurdon-institute/Egg_Chamber_Analysis’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 19, 2024
  • OrganoidArea Public

    Segment and measure areas of dense organoids in RGB images

    gurdon-institute/OrganoidArea’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 10, 2023
  • gurdon-institute/Freddy_allslices’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 2, 2022
  • Synaptic-Density-Analysis Public

    Density and co-localisation of pre- and post-synaptic markers

    gurdon-institute/Synaptic-Density-Analysis’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Aug 30, 2022
  • HKM-Segment Public

    Hierarchical K-Means Segmentation

    gurdon-institute/HKM-Segment’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Jun 1, 2022
  • Nucleus_Measure Public

    Segment nuclei in C1, measure intensity statistics in all other channels

    gurdon-institute/Nucleus_Measure’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 8, 2021
  • DNA_Density Public

    multi-level DNA density analysis

    gurdon-institute/DNA_Density’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 24, 2021
  • ESCoP Public

    Easy Statistical Colocalisation Plot

    gurdon-institute/ESCoP’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Aug 20, 2021
  • FLS_Ace Public
    gurdon-institute/FLS_Ace’s past year of commit activity
    Java 0 0 0 0 Updated Mar 16, 2021

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