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processed_data

processed_data

 
 

.gitignore

.gitignore

 
 

Experiments - Ensembles AVG-Normalized.ipynb

Experiments - Ensembles AVG-Normalized.ipynb

 
 

Experiments - Multilayer Net.ipynb

Experiments - Multilayer Net.ipynb

 
 

Experiments Single Net - Gene Scores.ipynb

Experiments Single Net - Gene Scores.ipynb

 
 

Experiments Single Net - Gene Seeds.ipynb

Experiments Single Net - Gene Seeds.ipynb

 
 

LICENSE

LICENSE

 
 

Map Catalog targets NCBI.ipynb

Map Catalog targets NCBI.ipynb

 
 

Map PEGASUS out to NCBI.ipynb

Map PEGASUS out to NCBI.ipynb

 
 

README.md

README.md

 
 

Select Gene Seeds.ipynb

Select Gene Seeds.ipynb

 
 

constants.py

constants.py

 
 

environment.yml

environment.yml

 
 

graphical_abstract.jpg

graphical_abstract.jpg

 
 

rwr_functions.py

rwr_functions.py

 
 

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Network Propagation for GWAS Analysis

This repository contains the code used to generate the results for the paper "Network propagation for GWAS analysis: a practical guide to leveraging molecular networks for disease gene discovery", by Giovanni Visonà, Emmanuelle Bouzigon, Florence Demenais, Gabriele Schweikert.

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