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Issues list

Feature request: filtered wigs --> 3' and 5' peak position table
#59 opened Jul 20, 2023 by julianstanley
Add raw reads/peak based shadow removal
#58 opened May 26, 2023 by miraep8
Current Z-score outlier removal method is resulting in increased number of false positives.
#57 opened May 26, 2023 by miraep8
Add notebooks to readthedocs documentation Improvements or additions to documentation good first issue Good for newcomers
#45 opened Jun 20, 2022 by julianstanley
2
Implement a web interface brainstorming/planning Input is needed to decide on a best course of action! Share your thoughts! enhancement New feature or request
#42 opened May 18, 2022 by julianstanley
@julianstanley
4
Identify and remove PCR jackpots brainstorming/planning Input is needed to decide on a best course of action! Share your thoughts! enhancement New feature or request
#40 opened May 10, 2022 by julianstanley
9
Add functionality for relevant biological questions brainstorming/planning Input is needed to decide on a best course of action! Share your thoughts!
#39 opened May 9, 2022 by miraep8
Create a github action to automate pypi release maintenance Updating internal code performance, updating language support etc,
#38 opened May 3, 2022 by miraep8
store data in objects rather than arrays? brainstorming/planning Input is needed to decide on a best course of action! Share your thoughts! enhancement New feature or request question Further information is requested
#37 opened May 3, 2022 by miraep8
1
Add more tests for hmm_peaks maintenance Updating internal code performance, updating language support etc,
#28 opened Apr 14, 2022 by miraep8
Refactor file paths good first issue Good for newcomers help wanted Extra attention is needed maintenance Updating internal code performance, updating language support etc,
#22 opened Apr 13, 2022 by julianstanley
Should parsing functions go into file_funcs? good first issue Good for newcomers maintenance Updating internal code performance, updating language support etc,
#19 opened Apr 13, 2022 by julianstanley
Put in more checks for correct argument type good first issue Good for newcomers maintenance Updating internal code performance, updating language support etc,
#18 opened Apr 13, 2022 by miraep8
Add logging functionality maintenance Updating internal code performance, updating language support etc,
#15 opened Apr 13, 2022 by miraep8
1
Adapt to bedgraph or multi-chromosome wig enhancement New feature or request
#9 opened Apr 9, 2022 by julianstanley
1
Add more optional arguments to command line interface for make_peaks enhancement New feature or request good first issue Good for newcomers
#4 opened Apr 8, 2022 by miraep8
[Planning] - What type of generative model should we implement? brainstorming/planning Input is needed to decide on a best course of action! Share your thoughts! enhancement New feature or request testing An issue related to building out the testing ability of the code.
#1 opened Apr 8, 2022 by miraep8
1
ProTip! Adding no:label will show everything without a label.