Annotation Source Definitions

There's a new mechanism to download bioentity mappings and annotations introduced in 2.0.9. In order to make use of it, you'll need to set up annotation sources. Sample configurations are given below.

How to create new Annotation Source.

How to create new Vitual Array Designs.

software.name = metazoa
software.version = 12
url = http://metazoa.ensembl.org/biomart/martservice?
organism = anopheles gambiae
databaseName = metazoa
datasetName = agambiae_eg_gene
mySqlDbName = anopheles_gambiae
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.symbol = external_gene_id
property.refseq = refseq_peptide
property.unigene = unigene
property.ensgene = ensembl_gene_id
property.interproterm = interpro_short_description
property.interpro = interpro
property.goterm = name_1006
property.description = description
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
property.go = go_accession
arrayDesign.A-AFFY-102 = affy_plasmodium_anopheles

software.name = plants
software.version = 12
url = http://plants.ensembl.org/biomart/martservice?
organism = arabidopsis thaliana
databaseName = plants
datasetName = athaliana_eg_gene
mySqlDbName = arabidopsis_thaliana
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.unigene = unigene
property.ensgene = ensembl_gene_id
property.interpro = interpro
property.interproterm = interpro_short_description
property.goterm = name_1006
property.symbol = external_gene_id
property.description = description
property.refseq = refseq_peptide
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_accession
arrayDesign.A-AFFY-2 = affy_ath1_121501

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = bos taurus
databaseName = ensembl
datasetName = btaurus_gene_ensembl
mySqlDbName = bos_taurus
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,human_ensembl_gene,yeast_ensembl_gene,rat_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.hgnc_symbol = hgnc_symbol
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-128 = affy_bovine

software.name = metazoa
software.version = 16
url = http://metazoa.ensembl.org/biomart/martservice?
organism = caenorhabditis elegans
databaseName = metazoa
datasetName = celegans_eg_gene
mySqlDbName = caenorhabditis_elegans
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.description = description
property.embl = embl
property.ensfamily = family
property.ensfamily_description = family_description
property.ensgene = ensembl_gene_id
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_id
property.goterm = name_1006
property.interpro = interpro
property.interproterm = interpro_description
property.ortholog = btaurus_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,drerio_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.symbol = external_gene_id
property.unigene = unigene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-60 = affy_c_elegans

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = canis familiaris
databaseName = ensembl
datasetName = cfamiliaris_gene_ensembl
mySqlDbName = canis_familiaris
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.ensgene = ensembl_gene_id
property.interproterm = interpro_short_description
property.interpro = interpro
property.goterm = name_1006
property.description = description
property.ortholog = cow_ensembl_gene,human_ensembl_gene,drosophila_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.uniprot = uniprot_swissprot_accession
property.go = go_id
arrayDesign.A-AFFY-149 = affy_canine_2

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = ciona intestinalis
databaseName = ensembl
datasetName = cintestinalis_gene_ensembl
mySqlDbName = ciona_intestinalis
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.unigene = unigene
property.embl = embl
property.interproterm = interpro_short_description
property.ensgene = ensembl_gene_id
property.interpro = interpro
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,cow_ensembl_gene,human_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-106 = affy_cint06a520380f

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = ciona savignyi
databaseName = ensembl
datasetName = csavignyi_gene_ensembl
mySqlDbName = ciona_savignyi
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = human_ensembl_gene,drosophila_ensembl_gene,cow_ensembl_gene,yeast_ensembl_gene,rat_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
property.go = go_id

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = danio rerio
databaseName = ensembl
datasetName = drerio_gene_ensembl
mySqlDbName = danio_rerio
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.interpro = interpro
property.interproterm = interpro_short_description
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = human_ensembl_gene,drosophila_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.hgnc_symbol = hgnc_symbol
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
property.go = go_id
arrayDesign.A-AFFY-38 = affy_zebrafish
arrayDesign.A-AGIL-30 = agilent_g2518a

software.name = metazoa
software.version = 16
url = http://metazoa.ensembl.org/biomart/martservice?
organism = drosophila melanogaster
databaseName = metazoa
datasetName = dmelanogaster_eg_gene
mySqlDbName = drosophila_melanogaster
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.description = description
property.embl = embl
property.ensfamily = family
property.ensfamily_description = family_description
property.ensgene = ensembl_gene_id
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.flybase_gene_id = flybase_gene_id
property.flybase_transcript_id = flybase_transcript_id
property.flybasename_gene = flybasename_gene
property.flybasename_transcript = flybasename_transcript
property.go = go_id
property.goterm = name_1006
property.interpro = interpro
property.interproterm = interpro_description
property.mirbase_accession = mirbase_accession
property.mirbase_id = mirbase_id
property.ortholog = btaurus_homolog_ensembl_gene,celegans_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,drerio_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,scerevisiae_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.symbol = external_gene_id
arrayDesign.A-AFFY-17 = affy_drosgenome1
arrayDesign.A-AFFY-35 = affy_drosophila_2

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = equus caballus
databaseName = ensembl
datasetName = ecaballus_gene_ensembl
mySqlDbName = equus_caballus
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.unigene = unigene
property.embl = embl
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,human_ensembl_gene,yeast_ensembl_gene,rat_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.mirbase_id = mirbase_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
property.go = go_id

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = gallus gallus
databaseName = ensembl
datasetName = ggallus_gene_ensembl
mySqlDbName = gallus_gallus
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.unigene = unigene
property.embl = embl
property.ensgene = ensembl_gene_id
property.interpro = interpro
property.interproterm = interpro_short_description
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,cow_ensembl_gene,human_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.hgnc_symbol = hgnc_symbol
property.ensprotein = ensembl_peptide_id
property.mirbase_id = mirbase_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
property.go = go_id
arrayDesign.A-AFFY-103 = affy_chicken

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = homo sapiens
databaseName = ensembl
datasetName = hsapiens_gene_ensembl
mySqlDbName = homo_sapiens
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.disease = mim_morbid_description
property.embl = embl
property.unigene = unigene
property.interpro = interpro
property.interproterm = interpro_short_description
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = cow_ensembl_gene,drosophila_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,dog_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.hgnc_symbol = hgnc_symbol
property.mirbase_id = mirbase_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-1 = affy_hg_u95av2
arrayDesign.A-AFFY-41 = affy_hg_focus
arrayDesign.A-AFFY-33 = affy_hg_u133a
arrayDesign.A-AFFY-32 = affy_hugenefl
arrayDesign.A-AFFY-44 = affy_hg_u133_plus_2
arrayDesign.A-AFFY-34 = affy_hg_u133b
arrayDesign.A-AFFY-37 = affy_hg_u133a_2
arrayDesign.A-AFFY-54 = affy_u133_x3p
arrayDesign.A-AFFY-12 = affy_hg_u95d
arrayDesign.A-AFFY-13 = affy_hg_u95e
arrayDesign.A-AFFY-10 = affy_hg_u95b
arrayDesign.A-GEOD-74 = affy_hc_g110
arrayDesign.A-AFFY-11 = affy_hg_u95c
arrayDesign.A-AFFY-9 = affy_hg_u95a
arrayDesign.A-AGIL-28 = efg_agilent_wholegenome_4x44k_v1
arrayDesign.A-GEOD-74 = affy_hc_g110
arrayDesign.A-MEXP-2102 = efg_agilent_sureprint_g3_ge_8x60k
arrayDesign.A-MEXP-2183 = efg_agilent_wholegenome_4x44k_v2
arrayDesign.A-MEXP-2246 = affy_huex_1_0_st_v2

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = macaca mulatta
databaseName = ensembl
datasetName = mmulatta_gene_ensembl
mySqlDbName = macaca_mulatta
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.ensgene = ensembl_gene_id
property.interproterm = interpro_short_description
property.interpro = interpro
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,human_ensembl_gene,cow_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.hgnc_symbol = hgnc_symbol
property.mirbase_id = mirbase_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-145 = affy_rhesus

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = mus musculus
databaseName = ensembl
datasetName = mmusculus_gene_ensembl
mySqlDbName = mus_musculus
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.mgi_description = mgi_description
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna
property.mirbase_accession = mirbase_accession
property.mgi_symbol = mgi_symbol
property.embl = embl
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.ortholog = cow_ensembl_gene,human_ensembl_gene,drosophila_ensembl_gene,yeast_ensembl_gene,rat_ensembl_gene,chicken_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.mgi_id = mgi_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_id
property.unigene = unigene
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-3 = affy_mg_u74a
arrayDesign.A-AFFY-4 = affy_mg_u74b
arrayDesign.A-AFFY-7 = affy_mg_u74bv2
arrayDesign.A-AFFY-98 = affy_moex_1_0_st_v1
arrayDesign.A-AFFY-8 = affy_mg_u74cv2
arrayDesign.A-AFFY-5 = affy_mg_u74c
arrayDesign.A-AFFY-6 = affy_mg_u74av2
arrayDesign.A-AFFY-45 = affy_mouse430_2
arrayDesign.A-AFFY-36 = affy_mouse430a_2
arrayDesign.A-AFFY-130 = affy_mogene_1_0_st_v1
arrayDesign.A-AFFY-14 = affy_mu11ksuba
arrayDesign.A-AFFY-15 = affy_mu11ksubb
arrayDesign.A-AFFY-23 = affy_moe430a
arrayDesign.A-AFFY-24 = affy_moe430b
arrayDesign.A-MEXP-2050 = efg_agilent_wholegenome_4x44k_v1
arrayDesign.A-MEXP-2114 = efg_agilent_sureprint_g3_ge_8x60k
arrayDesign.A-MEXP-2218 = efg_agilent_wholegenome_4x44k_v2

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = rattus norvegicus
databaseName = ensembl
datasetName = rnorvegicus_gene_ensembl
mySqlDbName = rattus_norvegicus
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.rgd_symbol = rgd_symbol
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.rgd = rgd
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.interproterm = interpro_short_description
property.goterm = name_1006
property.description = description
property.ortholog = human_ensembl_gene,drosophila_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-25 = affy_rae230a
arrayDesign.A-AFFY-26 = affy_rae230b
arrayDesign.A-AFFY-21 = affy_rt_u34
arrayDesign.A-AFFY-22 = affy_rn_u34
arrayDesign.A-AFFY-99 = affy_raex_1_0_st_v1
arrayDesign.A-AFFY-43 = affy_rat230_2
arrayDesign.A-AFFY-20 = affy_rg_u34c
arrayDesign.A-AFFY-19 = affy_rg_u34b
arrayDesign.A-AFFY-18 = affy_rg_u34a
arrayDesign.A-GEOD-14745 = efg_agilent_wholegenome_4x44k_v3
arrayDesign.A-MEXP-2237 = efg_agilent_sureprint_g3_ge_8x60k
arrayDesign.A-MEXP-784 = efg_agilent_wholegenome_4x44k_v1

software.name = fungi
software.version = 16
url = http://fungi.ensembl.org/biomart/martservice?
organism = saccharomyces cerevisiae
databaseName = fungi
datasetName = scerevisiae_eg_gene
mySqlDbName = saccharomyces_cerevisiae
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.description = description
property.embl = embl
property.ensfamily = family
property.ensfamily_description = family_description
property.ensgene = ensembl_gene_id
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_id
property.goterm = name_1006
property.interpro = interpro
property.interproterm = interpro_description
property.ortholog = btaurus_homolog_ensembl_gene,celegans_homolog_ensembl_gene,cfamiliaris_homolog_ensembl_gene,cintestinalis_homolog_ensembl_gene,csavignyi_homolog_ensembl_gene,dmelanogaster_homolog_ensembl_gene,drerio_homolog_ensembl_gene,ecaballus_homolog_ensembl_gene,ggallus_homolog_ensembl_gene,hsapiens_homolog_ensembl_gene,mmulatta_homolog_ensembl_gene,mmusculus_homolog_ensembl_gene,rnorvegicus_homolog_ensembl_gene,sscrofa_homolog_ensembl_gene,xtropicalis_homolog_ensembl_gene
property.refseq = refseq_peptide
property.symbol = external_gene_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-27 = affy_yg_s98
arrayDesign.A-AFFY-47 = affy_yeast_2

software.name = fungi
software.version = 12
url = http://fungi.ensembl.org/biomart/martservice?
organism = schizosaccharomyces pombe
databaseName = fungi
datasetName = spombe_eg_gene
mySqlDbName = schizosaccharomyces_pombe
mySqlDbUrl = mysql.ebi.ac.uk:4157
types = enstranscript,ensgene
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.symbol = external_gene_id
property.description = description
property.refseq = refseq_peptide
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.entrezgene = entrezgene
property.go = go_accession
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = sus scrofa
databaseName = ensembl
datasetName = sscrofa_gene_ensembl
mySqlDbName = sus_scrofa
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_mrna,refseq_ncrna,refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.interproterm = interpro_short_description
property.interpro = interpro
property.ensgene = ensembl_gene_id
property.goterm = name_1006
property.description = description
property.ortholog = horse_ensembl_gene,human_ensembl_gene,drosophila_ensembl_gene,yeast_ensembl_gene,rat_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene,xenopus_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-75 = affy_porcine

software.name = Ensembl
software.version = 65
url = http://www.ensembl.org/biomart/martservice?
organism = xenopus laevis
databaseName = ensembl
datasetName = xtropicalis_gene_ensembl
mySqlDbName = xenopus_tropicalis
mySqlDbUrl = ensembldb.ensembl.org:5306
types = enstranscript,ensgene
property.ensfamily = family
property.symbol = external_gene_id
property.ensfamily_description = family_description
property.refseq = refseq_peptide
property.mirbase_accession = mirbase_accession
property.embl = embl
property.unigene = unigene
property.ensgene = ensembl_gene_id
property.interpro = interpro
property.interproterm = interpro_short_description
property.goterm = name_1006
property.description = description
property.ortholog = drosophila_ensembl_gene,human_ensembl_gene,rat_ensembl_gene,yeast_ensembl_gene,zebrafish_ensembl_gene,chicken_ensembl_gene,mouse_ensembl_gene,ciona_intestinalis_ensembl_gene
property.ensprotein = ensembl_peptide_id
property.enstranscript = ensembl_transcript_id
property.mirbase_id = mirbase_id
property.entrezgene = entrezgene
property.go = go_id
property.uniprot = uniprot_sptrembl,uniprot_swissprot_accession
arrayDesign.A-AFFY-154 = affy_xtropicalis

software.name = GeneSigDB
software.version = 4.0
url = http://compbio.dfci.harvard.edu/genesigdb/download/GeneSigDBv4.0_STANDARDIZED_GENELIST.csv
types = ensgene
property.ensgene = ensembl_gene_id
property.genesigdbid = signature_id