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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

Pinned

  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 10 10

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 16 9

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 36 7

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 4 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 6 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 6 8

Repositories

Showing 10 of 45 repositories
  • mira Public

    MIRA modeling framework

    Jupyter Notebook 8 BSD-2-Clause 6 11 3 Updated Apr 26, 2024
  • pybiopax Public

    PyBioPAX: A python implementation of the BioPAX object model

    Python 21 BSD-2-Clause 6 1 0 Updated Apr 26, 2024
  • gyorilab.github.io Public

    Gyori Lab website

    JavaScript 3 3 0 0 Updated Apr 25, 2024
  • trialsynth Public

    TrialSynth interprets and integrates clinical trials data from multiple registries in a computable form

    0 0 0 0 Updated Apr 17, 2024
  • indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 6 BSD-2-Clause 8 12 5 Updated Apr 12, 2024
  • indra_network_search Public

    REST API for querying the network of biochemical mechanisms in the INDRA DB.

    Python 0 BSD-2-Clause 2 11 0 Updated Apr 5, 2024
  • outbreak_kg Public

    Knowledge graphs for disease outbreak scenarios

    Python 0 0 0 0 Updated Mar 28, 2024
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    Python 16 GPL-3.0 9 6 3 Updated Mar 12, 2024
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 36 BSD-2-Clause 7 8 3 Updated Mar 12, 2024
  • opaque Public

    Outlier Prevalence Analysis for Quantification of Unknown Entities

    Python 0 BSD-2-Clause 1 0 0 Updated Mar 4, 2024
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