h5py install fails on M1

[NAThompson]

Background info:

$ uname -a
Darwin MacBook-Pro.local 20.5.0 Darwin Kernel Version 20.5.0: Sat May  8 05:10:31 PDT 2021; root:xnu-7195.121.3~9/RELEASE_ARM64_T8101 arm64
$ python3.9 --version # acquired from system
Python 3.9.6
$ brew install hdf5
Warning: hdf5 1.12.1 is already installed and up-to-date.

To reproduce:

$ python3.9 -m venv .
$ . bin/activate
$ cat requirement.txt
numpy >= 1.21.0
h5py >= 3.3.0
$ pip3 install -r requirements.txt
Collecting numpy>=1.21.0
  Using cached numpy-1.21.1-cp39-cp39-macosx_11_0_arm64.whl (12.4 MB)
Collecting h5py>=3.3.0
  Using cached h5py-3.3.0.tar.gz (380 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... error
  ERROR: Command errored out with exit status 1:
   command: /Users/nathompson7/reproduce/bin/python3.9 /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-standalone-pip-fnjm6ps0/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-build-env-1upvtdul/normal --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'Cython>=0.29.15; python_version >= "3.9"' 'numpy==1.14.5; python_version == "3.7"' 'numpy==1.19.3; python_version >= "3.9"' pkgconfig 'numpy==1.17.5; python_version == "3.8"' 'Cython>=0.29.14; python_version == "3.8"' 'Cython>=0.29; python_version < "3.8"'
       cwd: None
  Complete output (900 lines):
  Ignoring numpy: markers 'python_version == "3.7"' don't match your environment
  Ignoring numpy: markers 'python_version == "3.8"' don't match your environment
  Ignoring Cython: markers 'python_version == "3.8"' don't match your environment
  Ignoring Cython: markers 'python_version < "3.8"' don't match your environment
  Collecting Cython>=0.29.15
    Using cached Cython-0.29.24-py2.py3-none-any.whl (979 kB)
  Collecting numpy==1.19.3
    Using cached numpy-1.19.3.zip (7.3 MB)
    Installing build dependencies: started
    Installing build dependencies: finished with status 'done'
    Getting requirements to build wheel: started
    Getting requirements to build wheel: finished with status 'done'
      Preparing wheel metadata: started
      Preparing wheel metadata: finished with status 'done'
  Collecting pkgconfig
    Using cached pkgconfig-1.5.5-py3-none-any.whl (6.7 kB)
  Building wheels for collected packages: numpy
    Building wheel for numpy (PEP 517): started
    Building wheel for numpy (PEP 517): finished with status 'error'
    ERROR: Command errored out with exit status 1:
     command: /Users/nathompson7/reproduce/bin/python3.9 /var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/tmpb5bfymas_in_process.py build_wheel /var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/tmp47b0th2i
         cwd: /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63
    Complete output (873 lines):
    Running from numpy source directory.
    numpy/random/_bounded_integers.pxd.in has not changed
    numpy/random/_philox.pyx has not changed
    numpy/random/_bounded_integers.pyx.in has not changed
    numpy/random/_sfc64.pyx has not changed
    numpy/random/_mt19937.pyx has not changed
    numpy/random/bit_generator.pyx has not changed
    Processing numpy/random/_bounded_integers.pyx
    numpy/random/mtrand.pyx has not changed
    numpy/random/_generator.pyx has not changed
    numpy/random/_pcg64.pyx has not changed
    numpy/random/_common.pyx has not changed
    Cythonizing sources
    blas_opt_info:
    blas_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    blis_info:
      libraries blis not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    openblas_info:
      libraries openblas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_3_10_blas_threads_info:
    Setting PTATLAS=ATLAS
      libraries tatlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_3_10_blas_info:
      libraries satlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_blas_threads_info:
    Setting PTATLAS=ATLAS
      libraries ptf77blas,ptcblas,atlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_blas_info:
      libraries f77blas,cblas,atlas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    accelerate_info:
      libraries accelerate not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
    Library accelerate was not found. Ignoring
      libraries veclib not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
    Library veclib was not found. Ignoring
      FOUND:
        extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

      FOUND:
        extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

    non-existing path in 'numpy/distutils': 'site.cfg'
    lapack_opt_info:
    lapack_mkl_info:
      libraries mkl_rt not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    openblas_lapack_info:
      libraries openblas not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    openblas_clapack_info:
      libraries openblas,lapack not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    flame_info:
      libraries flame not found in ['/Users/nathompson7/reproduce/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
      libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
      libraries tatlas,tatlas not found in /Users/nathompson7/reproduce/lib
      libraries lapack_atlas not found in /usr/lib
      libraries tatlas,tatlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE

    atlas_3_10_info:
      libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
      libraries satlas,satlas not found in /Users/nathompson7/reproduce/lib
      libraries lapack_atlas not found in /usr/lib
      libraries satlas,satlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE

    atlas_threads_info:
    Setting PTATLAS=ATLAS
      libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
      libraries ptf77blas,ptcblas,atlas not found in /Users/nathompson7/reproduce/lib
      libraries lapack_atlas not found in /usr/lib
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE

    atlas_info:
      libraries lapack_atlas not found in /Users/nathompson7/reproduce/lib
      libraries f77blas,cblas,atlas not found in /Users/nathompson7/reproduce/lib
      libraries lapack_atlas not found in /usr/lib
      libraries f77blas,cblas,atlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE

      FOUND:
        extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

    /opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
      warnings.warn(msg)
    running bdist_wheel
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building py_modules sources
    building library "npymath" sources
      adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath' to include_dirs.
    None - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h']
    building library "npysort" sources
      adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/common' to include_dirs.
    None - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_sort.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_partition.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_binsearch.h']
    building library "npyrandom" sources
    building extension "numpy.core._multiarray_tests" sources
    building extension "numpy.core._multiarray_umath" sources
      adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath' to include_dirs.
      adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath' to include_dirs.
      adding 'build/src.macosx-11-arm64-3.9/numpy/core/src/common' to include_dirs.
    numpy.core - nothing done with h_files = ['build/src.macosx-11-arm64-3.9/numpy/core/src/umath/funcs.inc', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/simd.inc', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/loops.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/matmul.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/umath/clip.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h', 'build/src.macosx-11-arm64-3.9/numpy/core/src/common/templ_common.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/config.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/_numpyconfig.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-11-arm64-3.9/numpy/core/include/numpy/__ufunc_api.h']
    building extension "numpy.core._umath_tests" sources
    building extension "numpy.core._rational_tests" sources
    building extension "numpy.core._struct_ufunc_tests" sources
    building extension "numpy.core._operand_flag_tests" sources
    building extension "numpy.fft._pocketfft_internal" sources
    building extension "numpy.linalg.lapack_lite" sources
    building extension "numpy.linalg._umath_linalg" sources
    building extension "numpy.random._mt19937" sources
    building extension "numpy.random._philox" sources
    building extension "numpy.random._pcg64" sources
    building extension "numpy.random._sfc64" sources
    building extension "numpy.random._common" sources
    building extension "numpy.random.bit_generator" sources
    building extension "numpy.random._generator" sources
    building extension "numpy.random._bounded_integers" sources
    building extension "numpy.random.mtrand" sources
    building data_files sources
    build_src: building npy-pkg config files
    running build_py
    creating build/lib.macosx-11-arm64-3.9
    creating build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/conftest.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/version.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/_globals.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/dual.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/_distributor_init.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/setup.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/ctypeslib.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/matlib.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying numpy/_pytesttester.py -> build/lib.macosx-11-arm64-3.9/numpy
    copying build/src.macosx-11-arm64-3.9/numpy/__config__.py -> build/lib.macosx-11-arm64-3.9/numpy
    creating build/lib.macosx-11-arm64-3.9/numpy/compat
    copying numpy/compat/py3k.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
    copying numpy/compat/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
    copying numpy/compat/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
    copying numpy/compat/_inspect.py -> build/lib.macosx-11-arm64-3.9/numpy/compat
    creating build/lib.macosx-11-arm64-3.9/numpy/compat/tests
    copying numpy/compat/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/compat/tests
    copying numpy/compat/tests/test_compat.py -> build/lib.macosx-11-arm64-3.9/numpy/compat/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/umath.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/fromnumeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_dtype.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_add_newdocs.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_methods.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_internal.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_string_helpers.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_asarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/records.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/setup_common.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/memmap.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/overrides.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/getlimits.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_dtype_ctypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/defchararray.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/shape_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/machar.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/function_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/einsumfunc.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/umath_tests.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_ufunc_config.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_exceptions.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/numerictypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/_type_aliases.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/cversions.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/arrayprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    copying numpy/core/code_generators/generate_numpy_api.py -> build/lib.macosx-11-arm64-3.9/numpy/core
    creating build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_numerictypes.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalar_methods.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalarmath.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_item_selection.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_machar.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_unicode.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_arrayprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalarbuffer.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_indexerrors.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_print.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_half.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_mem_overlap.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_shape_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_deprecations.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_errstate.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_records.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalarinherit.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_indexing.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_umath.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_function_base.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_datetime.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test__exceptions.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_extint128.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_umath_complex.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/_locales.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_defchararray.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_conversion_utils.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalarprint.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_abc.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_ufunc.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_dtype.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_umath_accuracy.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_getlimits.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_einsum.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_api.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_longdouble.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_overrides.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_scalar_ctors.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_memmap.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_nditer.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_cpu_features.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_protocols.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    copying numpy/core/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/core/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/unixccompiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/numpy_distribution.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/conv_template.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/cpuinfo.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/ccompiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
    copying numpy/distutils/msvc9compiler.py -> build/lib.macosx-11-arm64-3.9/numpy/distutils
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    creating build/lib.macosx-11-arm64-3.9/numpy/ma/tests
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    copying numpy/ma/tests/test_deprecations.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    copying numpy/ma/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    copying numpy/ma/tests/test_subclassing.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    copying numpy/ma/tests/test_extras.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    copying numpy/ma/tests/test_mrecords.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    copying numpy/ma/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/ma/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/matrixlib
    copying numpy/matrixlib/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
    copying numpy/matrixlib/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
    copying numpy/matrixlib/defmatrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib
    creating build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_matrix_linalg.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_defmatrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_interaction.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_numeric.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_masked_matrix.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_multiarray.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    copying numpy/matrixlib/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/matrixlib/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/laguerre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/_polybase.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/polyutils.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/hermite_e.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/chebyshev.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/polynomial.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/legendre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    copying numpy/polynomial/hermite.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial
    creating build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_chebyshev.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_hermite_e.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_polynomial.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_laguerre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_legendre.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_printing.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_hermite.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_classes.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    copying numpy/polynomial/tests/test_polyutils.py -> build/lib.macosx-11-arm64-3.9/numpy/polynomial/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/random
    copying numpy/random/_pickle.py -> build/lib.macosx-11-arm64-3.9/numpy/random
    copying numpy/random/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/random
    copying numpy/random/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/random
    creating build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_generator_mt19937.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_randomstate.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_direct.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_extending.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_smoke.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_randomstate_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_seed_sequence.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_generator_mt19937_regressions.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_random.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    copying numpy/random/tests/test_regression.py -> build/lib.macosx-11-arm64-3.9/numpy/random/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/testing
    copying numpy/testing/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
    copying numpy/testing/setup.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
    copying numpy/testing/utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
    copying numpy/testing/print_coercion_tables.py -> build/lib.macosx-11-arm64-3.9/numpy/testing
    creating build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/nosetester.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/noseclasses.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/parameterized.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    copying numpy/testing/_private/decorators.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/_private
    creating build/lib.macosx-11-arm64-3.9/numpy/testing/tests
    copying numpy/testing/tests/test_utils.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
    copying numpy/testing/tests/test_decorators.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
    copying numpy/testing/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
    copying numpy/testing/tests/test_doctesting.py -> build/lib.macosx-11-arm64-3.9/numpy/testing/tests
    creating build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_warnings.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_matlib.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_ctypeslib.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_numpy_version.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/__init__.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_reloading.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_public_api.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    copying numpy/tests/test_scripts.py -> build/lib.macosx-11-arm64-3.9/numpy/tests
    running build_clib
    customize UnixCCompiler
    customize UnixCCompiler using new_build_clib
    building 'npymath' library
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

    creating build/temp.macosx-11-arm64-3.9
    creating build/temp.macosx-11-arm64-3.9/numpy
    creating build/temp.macosx-11-arm64-3.9/numpy/core
    creating build/temp.macosx-11-arm64-3.9/numpy/core/src
    creating build/temp.macosx-11-arm64-3.9/numpy/core/src/npymath
    creating build/temp.macosx-11-arm64-3.9/build
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/npymath
    compile options: '-Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
    clang: numpy/core/src/npymath/npy_math.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/npy_math_complex.c
    clang: numpy/core/src/npymath/halffloat.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/ieee754.c
    In file included from numpy/core/src/npymath/npy_math.c:9:
    numpy/core/src/npymath/npy_math_internal.h.src:490:21: warning: incompatible pointer types passing 'npy_longdouble *' (aka 'double *') to parameter of type 'long double *' [-Wincompatible-pointer-types]
        return modfl(x, iptr);
                        ^~~~
    /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/math.h:394:52: note: passing argument to parameter here
    extern long double modfl(long double, long double *);
                                                       ^
    1 warning generated.
    ar: adding 4 object files to build/temp.macosx-11-arm64-3.9/libnpymath.a
    ranlib:@ build/temp.macosx-11-arm64-3.9/libnpymath.a
    building 'npysort' library
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/npysort
    compile options: '-Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/mergesort.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/timsort.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/quicksort.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/heapsort.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/radixsort.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/selection.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npysort/binsearch.c
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    numpy/core/src/npysort/selection.c.src:328:9: warning: code will never be executed [-Wunreachable-code]
            npy_intp k;
            ^~~~~~~~~~~
    numpy/core/src/npysort/selection.c.src:326:14: note: silence by adding parentheses to mark code as explicitly dead
        else if (0 && kth == num - 1) {
                 ^
                 /* DISABLES CODE */ ( )
    22 warnings generated.
    ar: adding 7 object files to build/temp.macosx-11-arm64-3.9/libnpysort.a
    ranlib:@ build/temp.macosx-11-arm64-3.9/libnpysort.a
    building 'npyrandom' library
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

    creating build/temp.macosx-11-arm64-3.9/numpy/random
    creating build/temp.macosx-11-arm64-3.9/numpy/random/src
    creating build/temp.macosx-11-arm64-3.9/numpy/random/src/distributions
    compile options: '-Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
    clang: numpy/random/src/distributions/logfactorial.c
    clang: numpy/random/src/distributions/distributions.c
    clang: numpy/random/src/distributions/random_mvhg_count.c
    clang: numpy/random/src/distributions/random_mvhg_marginals.c
    clang: numpy/random/src/distributions/random_hypergeometric.c
    ar: adding 5 object files to build/temp.macosx-11-arm64-3.9/libnpyrandom.a
    ranlib:@ build/temp.macosx-11-arm64-3.9/libnpyrandom.a
    running build_ext
    customize UnixCCompiler
    customize UnixCCompiler using new_build_ext
    building 'numpy.core._multiarray_tests' extension
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray
    creating build/temp.macosx-11-arm64-3.9/numpy/core/src/common
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/_multiarray_tests.c
    clang: numpy/core/src/common/mem_overlap.c
    In file included from numpy/core/src/multiarray/_multiarray_tests.c.src:7:
    In file included from numpy/core/include/numpy/npy_math.h:596:
    numpy/core/src/npymath/npy_math_internal.h.src:490:21: warning: incompatible pointer types passing 'npy_longdouble *' (aka 'double *') to parameter of type 'long double *' [-Wincompatible-pointer-types]
        return modfl(x, iptr);
                        ^~~~
    /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/math.h:394:52: note: passing argument to parameter here
    extern long double modfl(long double, long double *);
                                                       ^
    numpy/core/src/multiarray/_multiarray_tests.c.src:1895:61: warning: format specifies type 'long double' but the argument has type 'npy_longdouble' (aka 'double') [-Wformat]
            PyOS_snprintf(str, sizeof(str), "%.*Lg", precision, x);
                                             ~~~~~              ^
                                             %.*g
    2 warnings generated.
    clang -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/_multiarray_tests.o build/temp.macosx-11-arm64-3.9/numpy/core/src/common/mem_overlap.o -L/opt/homebrew/lib -L/opt/homebrew/opt/openssl@1.1/lib -L/opt/homebrew/opt/sqlite/lib -Lbuild/temp.macosx-11-arm64-3.9 -lnpymath -o build/lib.macosx-11-arm64-3.9/numpy/core/_multiarray_tests.cpython-39-darwin.so
    building 'numpy.core._multiarray_umath' extension
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

    creating build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray
    creating build/temp.macosx-11-arm64-3.9/numpy/core/src/umath
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/umath
    creating build/temp.macosx-11-arm64-3.9/build/src.macosx-11-arm64-3.9/numpy/core/src/common
    creating build/temp.macosx-11-arm64-3.9/private
    creating build/temp.macosx-11-arm64-3.9/private/var
    creating build/temp.macosx-11-arm64-3.9/private/var/folders
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils
    creating build/temp.macosx-11-arm64-3.9/private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils/src
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/umath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c'
    extra options: '-faltivec -I/System/Library/Frameworks/vecLib.framework/Headers'
    clang: numpy/core/src/multiarray/alloc.c
    clang: numpy/core/src/multiarray/array_assign_scalar.c
    clang: numpy/core/src/multiarray/buffer.c
    clang: numpy/core/src/multiarray/common.c
    clang: numpy/core/src/multiarray/conversion_utils.c
    clang: numpy/core/src/multiarray/datetime_strings.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/einsum.c
    clang: numpy/core/src/multiarray/descriptor.c
    clang: error: clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: numpy/core/src/multiarray/hashdescr.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/multiarray/lowlevel_strided_loops.c
    clang: numpy/core/src/multiarray/multiarraymodule.c
    clangclang: : error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: numpy/core/src/multiarray/nditer_constr.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: numpy/core/src/multiarray/refcount.c
    clang: numpy/core/src/multiarray/vdot.c
    clang: numpy/core/src/multiarray/temp_elide.c
    clang: numpy/core/src/multiarray/scalarapi.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/umath/loops.c
    clang: numpy/core/src/umath/ufunc_object.c
    clang: numpy/core/src/umath/ufunc_type_resolution.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/npymath/ieee754.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: numpy/core/src/common/array_assign.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: numpy/core/src/common/ucsnarrow.c
    clang: build/src.macosx-11-arm64-3.9/numpy/core/src/common/npy_cpu_features.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-install-rt8dwclw/numpy_99fc1db8e0b64d64a094cdbef9fa6a63/numpy/_build_utils/src/apple_sgemv_fix.c
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    clang: error: the clang compiler does not support 'faltivec', please use -maltivec and include altivec.h explicitly
    error: Command "clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/umath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Inumpy/core/include -Ibuild/src.macosx-11-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/homebrew/include -I/opt/homebrew/opt/openssl@1.1/include -I/opt/homebrew/opt/sqlite/include -I/Users/nathompson7/reproduce/include -I/opt/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/include/python3.9 -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11-arm64-3.9/numpy/core/src/npymath -c numpy/core/src/multiarray/alloc.c -o build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray/alloc.o -MMD -MF build/temp.macosx-11-arm64-3.9/numpy/core/src/multiarray/alloc.o.d -faltivec -I/System/Library/Frameworks/vecLib.framework/Headers" failed with exit status 1
    ----------------------------------------
    ERROR: Failed building wheel for numpy
  Failed to build numpy
  ERROR: Could not build wheels for numpy which use PEP 517 and cannot be installed directly
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/61/0f/e7e57c4b87d027d74acf75e0fc49aff8aca87d6ff7b2e655c183a714044d/h5py-3.3.0.tar.gz#sha256=e0dac887d779929778b3cfd13309a939359cc9e74756fc09af7c527a82797186 (from https://pypi.org/simple/h5py/) (requires-python:>=3.7). Command errored out with exit status 1: /Users/nathompson7/reproduce/bin/python3.9 /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-standalone-pip-fnjm6ps0/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /private/var/folders/wm/xzjzsc4932lc6cq5lxdbxsww0000gn/T/pip-build-env-1upvtdul/normal --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'Cython>=0.29.15; python_version >= "3.9"' 'numpy==1.14.5; python_version == "3.7"' 'numpy==1.19.3; python_version >= "3.9"' pkgconfig 'numpy==1.17.5; python_version == "3.8"' 'Cython>=0.29.14; python_version == "3.8"' 'Cython>=0.29; python_version < "3.8"' Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement h5py>=3.3.0 (from versions: 2.2.1, 2.3.0b1, 2.3.0, 2.3.1, 2.4.0b1, 2.4.0, 2.5.0, 2.6.0, 2.7.0rc2, 2.7.0, 2.7.1, 2.8.0rc1, 2.8.0, 2.9.0rc1, 2.9.0, 2.10.0, 3.0.0rc1, 3.0.0, 3.1.0, 3.2.0, 3.2.1, 3.3.0)
ERROR: No matching distribution found for h5py>=3.3.0

[hagan]

I'm also having this problem but with python 3.8 on an m1 cpu. I believe this is the cause/fix: numpy/numpy#18160. Numpy's devs appear to be working out a patch that removes the -faltivec flag for us and that'll eventually be back-ported into other active numpy versions.. Hoping that'll include (numpy 1.19 and 1.17)..

A workaround might be disabling pep517, but I didn't have much luck with the --no-use-pep517 (using pipenv myself) but I did successfully install h5py via git cloning this repo and changing the referenced numpy version in setup.py.

NUMPY_MIN_VERSIONS = [
    # Numpy    Python
    ('1.14.5', "=='3.7'"),
    # ('1.17.5', "=='3.8'"),
    **('1.21.1', "=='3.8'"),**
    # ('1.19.3', ">='3.9'"),
    **('1.21.1'', ">='3.9'"),**
]

I'm sure that's pinned for a reason; in my case I'm not using data stored in hdf5 format with numpy, so no harm.

[tacaswell]

@NAThompson , @hagan correctly identified that as a numpy installation issue.

@hagan Those are the minimum versions of numpy we support, it is expected that h5py will work with any newer version. When you access data from a dataset we will return a numpy array and use numpy heavily internally to handle the buffers that libhdf5 returns so you are definitely reliant on numpy working correctly for h5py to work correctly!

[tacaswell]

I'm going to close this because there is nothing we can do on the h5py side as this is a numpy build / installation issue.

[TylerADavis]

@tacaswell I just talked to the NumPy devs, and they said they would not be making another release of NumPy 1.19. They recommended using oldest-supported-numpy, which has a stanza for Darwin + arm64.

See numpy/numpy#18160 (comment) and the README of oldest-supported-numpy for some additional detail.

With this information, should this issue be reopened?

[TylerADavis]

@tacaswell I've opened #1993, which I believe should fix this. Could you take a look and let me know what you think?