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WIP: retrieving metadata from bids-formatted json files #27
Commits on Mar 18, 2021
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get_metadata_val is splitted into 3 functions: get_metadata_val_classic -- original code of get_metadata_val get_metadata_val_header -- retrive metadata from nifti get_metadata_val_bids -- retrive metadata from bidsified json The get_metadata_val checks if recieved structure contains 'acqpar' and based on it colls one of 3 functions
Beliy Nikita committedMar 18, 2021 Configuration menu - View commit details
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Commits on Mar 19, 2021
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Added: - isDWI from filename suffix - AllDiffusionDirections from bvec file - AllDiffusionValues from bval file In order to get this info, added a new field to meta structure: 'filename' containing the path to data file. bval and bvec are retrieved by changing extension
Beliy Nikita committedMar 19, 2021 Configuration menu - View commit details
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Beliy Nikita committed
Mar 19, 2021 Configuration menu - View commit details
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Commits on Mar 23, 2021
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Forced row vector for B1FAValues
Beliy Nikita committedMar 23, 2021 Configuration menu - View commit details
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Commits on Apr 9, 2021
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When possible the metadata structure is loaded and passed to the 'classic' or 'BIDS' get_metadata_val subfunctions.
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Commits on Apr 12, 2021
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No need to try and reload mstruct + cosmetic
Since there should not be any direct call to this function with a filename, one can remove the reloading of the mstruct based on a filename.
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Adding possibility to load PEdir sign directly
This is NOT in BIDS spaces but could be useful for some old data. It's only an added features and does not break back compatibility.
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Bug fix: Adding missing line to get the value
After looking for the 'TotalReadoutTime' field, one need to load the associated value then proceed.
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Commits on Apr 14, 2021
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Beliy Nikita committed
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Commits on Apr 29, 2021
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Merge remote-tracking branch 'crc-github/FixSPMjsonReadWrite' into be…
…liy-get-metadata-bids Synchronising master branches
Beliy Nikita committedApr 29, 2021 Configuration menu - View commit details
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Commits on May 20, 2021
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Added reordering of B1 maps following their fa
Beliy Nikita committedMay 20, 2021 Configuration menu - View commit details
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Commits on Jul 2, 2021
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Added test for number of B1 maps
Beliy Nikita committedJul 2, 2021 Configuration menu - View commit details
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Beliy Nikita committed
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Changed echo1 and echo2 to SE and STE, as requested
Beliy Nikita committedJul 2, 2021 Configuration menu - View commit details
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Commits on Jul 22, 2021
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Beliy Nikita committed
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Commits on Jul 23, 2021
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Minor tidying of hmri_create_b1map.m changes
Slightly more informative error message if number of images and angles don't match; using assert syntax (rather than "if X, then error"); replaced a couple of "echo1", "echo2" in comments that had been missed; matched indexing of P to the rest of the code (avoiding potential errors if P given as 1xN array); no longer need to account for possibility of "extra" elements in the P array (because of explicit assert statement).
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Commits on Jul 26, 2021
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Added retrieval of bids field if it's not in list
Beliy Nikita committedJul 26, 2021 Configuration menu - View commit details
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Commits on Jul 27, 2021
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Found I had introduced a bug with the previous commit. Now use volume…
… structs instead of char arrays. Added extra assert statement to check image pairs provided.
Luke Edwards committedJul 27, 2021 Configuration menu - View commit details
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Merge pull request #28 from hMRI-group/b1map_fa_order
Added reordering of B1 maps following their fa
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Commits on Oct 25, 2021
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Fixed units in EchoSpce in classic metadata
Beliy Nikita committedOct 25, 2021 Configuration menu - View commit details
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Added explicit units to EchoSpacing in get_metadata_val_classic
Beliy Nikita committedOct 25, 2021 Configuration menu - View commit details
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