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  1. SCopeLoomR SCopeLoomR Public

    Forked from aertslab/SCopeLoomR

    An R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...

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  2. salmon salmon Public

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    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

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  3. FastKnock FastKnock Public

    Outdated code to implement the Fastknock algorithm published in Microbial Cell Factories 2024 (PMID: 38287320). Moved to https://github.com/leilahsn/FastKnock.

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    The iNETgrate R package ready for submission to Bioconductor