[vds/combiner] use get_lgt for PGT handling as well #13829
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danking
previously requested changes
Oct 16, 2023
| def get_lgt(e, n_alleles, has_non_ref, row): | ||
| index = e.GT.unphased_diploid_gt_index() | ||
| def get_lgt(gt, n_alleles, has_non_ref, row): | ||
| index = gt.unphased_diploid_gt_index() |
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Is this function valid on phased GTs? Do we need to unphase it first?
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we do thanks for checking
danking
approved these changes
Oct 16, 2023
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resolves #13828