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[query] better error message when info array field has missing elements #14105

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merged 9 commits into from Jan 11, 2024

Commits on Dec 18, 2023

  1. [query] better error message when info array field has missing elements

    Fixes hail-is#13346.
    
    Another user was confused by this: hail-is#14102. Unfortunately, the world
    appears to have embraced missing values in VCF array fields even though the single element case is
    ambiguous. In hail-is#13346, I proposed a scheme by which we can disambiguate many of the cases, but implementing
    it ran into challenges because LoadVCF.scala does not expose whether or not an INFO field was a literal
    "." or elided entirely from that line.
    
    Anyway, this error message actually points users to the fix. I also changed some method names such that
    every method is ArrayType and never TypeArray.
    danking committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. fix doctest

    danking committed Dec 19, 2023
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Commits on Jan 9, 2024

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  2. scalafmt

    danking committed Jan 9, 2024
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  5. fix import_vcf doc example

    danking committed Jan 9, 2024
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  6. Update test_impex.py

    danking committed Jan 9, 2024
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  7. reformat table

    danking committed Jan 9, 2024
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