Make reduce output better

hajya · May 20, 2012 · c0bd3c4 · c0bd3c4
1 parent 94bceb9
commit c0bd3c4
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Showing 4 changed files with 7 additions and 8 deletions.
diff --git a/aarc_scoring/aarc.py b/aarc_scoring/aarc.py
@@ -171,7 +171,7 @@ def alignments_to_json(filename, fileFormat):
     be exported to a json string'''
     alignments = AlignIO.read(open(filename), fileFormat)
     homologue = {}
-    homologue["protienID"] = alignments[0].description
+    homologue["proteinName"] = alignments[0].description
     homologue["searchQuery"] = str(alignments[0].seq)
     protiens = []
     for element in alignments:
@@ -201,7 +201,7 @@ def read_homologue_pair(pair):
 class jsonHomologue():
     '''Homologues represented by json lines'''
     def __init__(self, homologue):
-        self.protienID = homologue["protienID"] #Metadata on search
+        self.proteinName = homologue["proteinName"] #Metadata on search
         self.searchQuery = homologue["searchQuery"] # Query used to find homologues
         self.alignments = homologue["species"] #this is the individual protien seqs
         #check to make sure alignments ar same length