dna-error-detection

An error detection algorithm for DNA sequences, written in modern C++.

• Task 1 report
• Task 2 report

Getting Started

Prerequisites

To set up the environment, you need to have the following dependencies installed.

• GNU make 4.0 or above
• GCC 9.0 or above (for C++17 features)
  • GCC 8.0 or below and Clang 12.0 or below are NOT supported

Building

• make: Build the project using GNU make, a Unix-like environment is required.

Usages

• make help: Show arguments and usages.
• make run: Run all preprocessing tasks and start the main process.
• make index: Create an index of reference data only.
• make minimizer: Find minimizers only.
• make start: Find sv deltas only.

Clean

• make clean: Remove all building files.

Contributors

• Hakula Chen<i@hakula.xyz> - Fudan University

License

This project is licensed under the GNU General Public License v3.0 - see the LICENSE file for details.