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ERROR - Could not read input tissue database. Please try updating the tissue model files. #109

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montenegrina opened this issue Nov 18, 2020 · 0 comments

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@montenegrina
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Hello,

I am trying to test if SPrediXcan.py can run on my cluster.
I am using: python-3.7.3
and following this tutorial: https://github.com/hakyimlab/MetaXcan/wiki/S-PrediXcan-Command-Line-Tutorial

The sample data was downloaded and I was running this:

/MetaXcan/software $ ./SPrediXcan.py \

--model_db_path data/DGN-WB_0.5.db
--covariance data/covariance.DGN-WB_0.5.txt.gz
--gwas_folder data/GWAS
--gwas_file_pattern ".*gz"
--snp_column SNP
--effect_allele_column A1
--non_effect_allele_column A2
--beta_column BETA
--pvalue_column P
--output_file results/test.csv
INFO - Processing GWAS command line parameters
ERROR - Could not read input tissue database. Please try updating the tissue model files.

Please advise,
Ana

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