We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hello,
I am trying to test if SPrediXcan.py can run on my cluster. I am using: python-3.7.3 and following this tutorial: https://github.com/hakyimlab/MetaXcan/wiki/S-PrediXcan-Command-Line-Tutorial
The sample data was downloaded and I was running this:
/MetaXcan/software $ ./SPrediXcan.py \
--model_db_path data/DGN-WB_0.5.db --covariance data/covariance.DGN-WB_0.5.txt.gz --gwas_folder data/GWAS --gwas_file_pattern ".*gz" --snp_column SNP --effect_allele_column A1 --non_effect_allele_column A2 --beta_column BETA --pvalue_column P --output_file results/test.csv INFO - Processing GWAS command line parameters ERROR - Could not read input tissue database. Please try updating the tissue model files.
Please advise, Ana
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hello,
I am trying to test if SPrediXcan.py can run on my cluster.
I am using: python-3.7.3
and following this tutorial: https://github.com/hakyimlab/MetaXcan/wiki/S-PrediXcan-Command-Line-Tutorial
The sample data was downloaded and I was running this:
/MetaXcan/software $ ./SPrediXcan.py \
Please advise,
Ana
The text was updated successfully, but these errors were encountered: