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Issues list

Compile Errors: *** [Makefile:59: cnvnator] Error 1
#155 opened Oct 12, 2023 by walidabualafia
Are CRAM files supported by SpeedSeq?
#154 opened May 26, 2023 by sandrine-cmf
make :can not find -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore
#153 opened Dec 8, 2022 by klelizi
[Question] Is ARM64 supported ?
#149 opened Jul 19, 2022 by gancho-ivanov
1
Speedseq is runnning infinitely
#148 opened Jun 5, 2021 by vivekruhela
1
mismatched line lengths at line 3 within sequence
#147 opened Jun 3, 2021 by vivekruhela
Bam file not generated using speedseq align
#146 opened Apr 30, 2021 by kghimire09
error: static assertion failed: comparison object must be invocable as const
#145 opened Feb 10, 2021 by mariana19901990
-M parameter for BWA MEM alignment
#144 opened Jan 4, 2021 by aariani
Linker error when doing make cnvnator
#143 opened Oct 7, 2020 by smichnowicz
is there a container?
#142 opened Jun 15, 2020 by RichardCorbett
2
speedseq var and sv only on genomic regions
#140 opened Jan 26, 2020 by d-kk
Warning: --split_bam (-S) is deprecated
#139 opened Nov 15, 2019 by Jia21
Parallel link is dead
#137 opened Jul 18, 2019 by taylorjtamu
1
Error -running speedseq SV - missing pair end parameters:mean stdev
#136 opened May 7, 2019 by bioteksampath
compilation of freebayes module fails on Ubuntu 18.04
#135 opened Jan 22, 2019 by pwaltman
2
Speedseq SV failure: reference not found
#133 opened Oct 21, 2018 by Ravillee
1
Can Speedseq be used on WGS generated from mice?
#132 opened Aug 24, 2018 by btoe
container image
#131 opened Aug 5, 2018 by lz100
'make clean' deletes annotate_rd.y and cnvnator_wrapper.py, but they are not regenerated by 'make'
#130 opened Jul 13, 2018 by ghost
tumor-normal workflow
#129 opened Jun 24, 2018 by ramcn
QUAL score of '.'
#128 opened Jun 19, 2018 by jgbaum
1
samtools compilation
#127 opened Apr 26, 2018 by ccario83
sambamba-sort: Cannot open or create file '/dev/stdin' : No such file or directory
#126 opened Apr 26, 2018 by ccario83
parallel file is empty
#124 opened Jan 8, 2018 by hanwenjuan
1
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