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Is there a reason this 'GT' needs to added when len(var_list)<9? It makes things weird with 8 col vcfs.
https://github.com/hall-lab/svtools/blob/master/svtools/vcf/variant.py#L27-L34
The text was updated successfully, but these errors were encountered:
I suspect this was behavior of a specific tool (vcfpaste maybe?) in the original code base. I'll check.
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stop auto-adding GT to the format field on 8-column VCFs. SVTyper adds
d238d20
this itself and is the only place we think this matters. Closes hall-lab#59.
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Is there a reason this 'GT' needs to added when len(var_list)<9? It makes things weird with 8 col vcfs.
https://github.com/hall-lab/svtools/blob/master/svtools/vcf/variant.py#L27-L34
The text was updated successfully, but these errors were encountered: