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Varlookup 209 #212

Merged
merged 4 commits into from
Aug 30, 2017
Merged

Varlookup 209 #212

merged 4 commits into from
Aug 30, 2017

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ernfrid
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@ernfrid ernfrid commented Aug 29, 2017

The BEDPE code for determining SVTYPE and AF checked if those substrings were present in an INFO field, not that there was an exact match. This resulted in #209 and these commits add tests and fix this issue by ensuring that the field string starts with 'AF=' or 'SVTYPE='.

@ernfrid ernfrid requested a review from abelhj August 29, 2017 21:43
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Coverage Status

Coverage remained the same at 83.668% when pulling 25fae2c on ernfrid:varlookup_209 into 292bd3c on hall-lab:develop.

@abelhj abelhj merged commit a9f0456 into hall-lab:develop Aug 30, 2017
@ernfrid ernfrid deleted the varlookup_209 branch November 19, 2018 22:41
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3 participants