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Configurable sex chromosomes for reclassification #248

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merged 7 commits into from
Mar 9, 2018
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@ernfrid ernfrid commented Mar 9, 2018

Work in progress.

Make names of sex chromosomes configurable for sv classifier

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coveralls commented Mar 9, 2018

Coverage Status

Coverage decreased (-0.1%) to 83.144% when pulling f9f7e7d on sex_chromosomes into f732d3d on develop.

Old code assumed X and Y and no chr prefix. This allows
for the names to be specified explicitly and defaults to
chrX and chrY to match human build 38.
@ernfrid ernfrid changed the title WIP: Sex chromosomes Configurable sex chromosomes for reclassification Mar 9, 2018
@ernfrid ernfrid merged commit a388644 into develop Mar 9, 2018
@ernfrid ernfrid deleted the sex_chromosomes branch March 9, 2018 16:21
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