Produce cmts

[ihodes]

Cf. hammerlab/ketrew#374

[smondet]

i just called omake:

ll _build/src/run_environment/*.cmt
-rw------- 1 smondet smondet 173K Feb  2 17:57 _build/src/run_environment/common.cmt
-rw------- 1 smondet smondet 128K Feb 15 09:53 _build/src/run_environment/machine.cmt
-rw------- 1 smondet smondet 5.3K Feb 15 09:53 _build/src/run_environment/metadata.cmt
-rw------- 1 smondet smondet  95K Feb 14 13:07 _build/src/run_environment/reference_genome.cmt
-rw------- 1 smondet smondet  35K Feb  2 17:57 _build/src/run_environment/region.cmt
-rw------- 1 smondet smondet  13K Feb  2 17:57 _build/src/run_environment/tool_parameters.cmt
-rw------- 1 smondet smondet 153K Feb 15 09:53 _build/src/run_environment/workflow_utilities.cmt

[smondet]

And -bin-annot is indeed there: https://github.com/hammerlab/biokepi/blob/master/OMakeroot#L23

[smondet]

Oh I see we don't produce cmt for the packs.