Apr13_tcga.ipynb

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    {
     "cell_type": "code",
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     "input": [
      "df = pd.read_csv('../canseq/tcga/tcga.brca.metadata.txt', sep='\\t')"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 14
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df.count()"
     ],
     "language": "python",
     "metadata": {},
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      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 15,
       "text": [
        "Sample Type                            919\n",
        "PAM50_mRna                             579\n",
        "name                                   919\n",
        "Complete_TCGA_ID                       919\n",
        "Gender                                 909\n",
        "Age_at_Initial_Pathologic_Diagnosis    909\n",
        "ER_Status                              909\n",
        "PR_Status                              909\n",
        "HER2_Final_Status                      876\n",
        "Tumor                                  876\n",
        "Tumor_T1_Coded                         873\n",
        "Node                                   876\n",
        "Node_Coded                             876\n",
        "Metastasis                             870\n",
        "Metastasis_Coded                       870\n",
        "AJCC_Stage                             876\n",
        "Converted_Stage                        876\n",
        "Survival_Data_Form                     909\n",
        "Vital_Status                           909\n",
        "Days_to_Date_of_Last_Contact           909\n",
        "Days_to_date_of_Death                  131\n",
        "OS_event                               909\n",
        "OS_Time                                909\n",
        "PAM50_mRNA                             579\n",
        "SigClust_Unsupervised_mRNA             579\n",
        "SigClust_Intrinsic_mRNA                579\n",
        "miRNA_Clusters                         777\n",
        "methylation_Clusters                   896\n",
        "RPPA_Clusters                          449\n",
        "CN_Clusters                            869\n",
        "Integrated_Clusters_with_PAM50         393\n",
        "Integrated_Clusters_no_exp             393\n",
        "Integrated_Clusters_unsup_exp          393\n",
        "dtype: int64"
       ]
      }
     ],
     "prompt_number": 15
    },
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     "input": [
      "df.Days_to_date_of_Death"
     ],
     "language": "python",
     "metadata": {},
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       "prompt_number": 16,
       "text": [
        "0     1555\n",
        "1      NaN\n",
        "2      NaN\n",
        "3     2762\n",
        "4      NaN\n",
        "5      NaN\n",
        "6      NaN\n",
        "7      NaN\n",
        "8      NaN\n",
        "9      NaN\n",
        "10     NaN\n",
        "11     NaN\n",
        "12     NaN\n",
        "13     NaN\n",
        "14     NaN\n",
        "...\n",
        "904     NaN\n",
        "905     NaN\n",
        "906    2192\n",
        "907     NaN\n",
        "908     NaN\n",
        "909    1388\n",
        "910    1759\n",
        "911    2052\n",
        "912    1796\n",
        "913     NaN\n",
        "914     NaN\n",
        "915     NaN\n",
        "916     NaN\n",
        "917     NaN\n",
        "918    1998\n",
        "Name: Days_to_date_of_Death, Length: 919, dtype: float64"
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     "prompt_number": 16
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     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[['Days_to_date_of_Death', 'Vital_Status']]"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "html": [
        "<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
        "<table border=\"1\" class=\"dataframe\">\n",
        "  <thead>\n",
        "    <tr style=\"text-align: right;\">\n",
        "      <th></th>\n",
        "      <th>Days_to_date_of_Death</th>\n",
        "      <th>Vital_Status</th>\n",
        "    </tr>\n",
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
        "      <th>0 </th>\n",
        "      <td> 1555</td>\n",
        "      <td> DECEASED</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>1 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
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        "    <tr>\n",
        "      <th>2 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>3 </th>\n",
        "      <td> 2762</td>\n",
        "      <td> DECEASED</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>4 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>5 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
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        "    <tr>\n",
        "      <th>6 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
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        "    <tr>\n",
        "      <th>7 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>8 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>9 </th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>11</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>12</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>13</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>14</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>15</th>\n",
        "      <td>  967</td>\n",
        "      <td> DECEASED</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>16</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>17</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>18</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>19</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>20</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>21</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>22</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>23</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>24</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>25</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>26</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>27</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>28</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>29</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>30</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>31</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>32</th>\n",
        "      <td>  523</td>\n",
        "      <td> DECEASED</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>33</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>34</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
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        "    <tr>\n",
        "      <th>35</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>36</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>37</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>38</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>39</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>40</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>41</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>42</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>43</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>44</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>45</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>46</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>47</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>48</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>49</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>50</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>51</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>52</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>53</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>54</th>\n",
        "      <td>  754</td>\n",
        "      <td> DECEASED</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>55</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>56</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>57</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>58</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>59</th>\n",
        "      <td>  NaN</td>\n",
        "      <td>   LIVING</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th></th>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "<p>919 rows \u00d7 2 columns</p>\n",
        "</div>"
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       "prompt_number": 19,
       "text": [
        "    Days_to_date_of_Death Vital_Status\n",
        "0                    1555     DECEASED\n",
        "1                     NaN       LIVING\n",
        "2                     NaN       LIVING\n",
        "3                    2762     DECEASED\n",
        "4                     NaN       LIVING\n",
        "5                     NaN       LIVING\n",
        "6                     NaN       LIVING\n",
        "7                     NaN       LIVING\n",
        "8                     NaN       LIVING\n",
        "9                     NaN       LIVING\n",
        "10                    NaN       LIVING\n",
        "11                    NaN       LIVING\n",
        "12                    NaN       LIVING\n",
        "13                    NaN       LIVING\n",
        "14                    NaN       LIVING\n",
        "15                    967     DECEASED\n",
        "16                    NaN       LIVING\n",
        "17                    NaN       LIVING\n",
        "18                    NaN       LIVING\n",
        "19                    NaN       LIVING\n",
        "20                    NaN       LIVING\n",
        "21                    NaN       LIVING\n",
        "22                    NaN       LIVING\n",
        "23                    NaN       LIVING\n",
        "24                    NaN       LIVING\n",
        "25                    NaN       LIVING\n",
        "26                    NaN       LIVING\n",
        "27                    NaN       LIVING\n",
        "28                    NaN       LIVING\n",
        "29                    NaN       LIVING\n",
        "30                    NaN       LIVING\n",
        "31                    NaN       LIVING\n",
        "32                    523     DECEASED\n",
        "33                    NaN       LIVING\n",
        "34                    NaN       LIVING\n",
        "35                    NaN       LIVING\n",
        "36                    NaN       LIVING\n",
        "37                    NaN       LIVING\n",
        "38                    NaN       LIVING\n",
        "39                    NaN       LIVING\n",
        "40                    NaN       LIVING\n",
        "41                    NaN       LIVING\n",
        "42                    NaN       LIVING\n",
        "43                    NaN       LIVING\n",
        "44                    NaN       LIVING\n",
        "45                    NaN       LIVING\n",
        "46                    NaN       LIVING\n",
        "47                    NaN       LIVING\n",
        "48                    NaN       LIVING\n",
        "49                    NaN       LIVING\n",
        "50                    NaN       LIVING\n",
        "51                    NaN       LIVING\n",
        "52                    NaN       LIVING\n",
        "53                    NaN       LIVING\n",
        "54                    754     DECEASED\n",
        "55                    NaN       LIVING\n",
        "56                    NaN       LIVING\n",
        "57                    NaN       LIVING\n",
        "58                    NaN       LIVING\n",
        "59                    NaN       LIVING\n",
        "                      ...          ...\n",
        "\n",
        "[919 rows x 2 columns]"
       ]
      }
     ],
     "prompt_number": 19
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df.Vital_Status.value_counts()"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 20,
       "text": [
        "LIVING      778\n",
        "DECEASED    131\n",
        "dtype: int64"
       ]
      }
     ],
     "prompt_number": 20
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "((df.Vital_Status == 'DECEASED') & (df.Age_at_Initial_Pathologic_Diagnosis <= 70)).sum()"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
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       "prompt_number": 21,
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        "94"
       ]
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     ],
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    },
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      "df"
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     "metadata": {},
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      {
       "html": [
        "<div style=\"max-height:1000px;max-width:1500px;overflow:auto;\">\n",
        "<table border=\"1\" class=\"dataframe\">\n",
        "  <thead>\n",
        "    <tr style=\"text-align: right;\">\n",
        "      <th></th>\n",
        "      <th>Sample Type</th>\n",
        "      <th>PAM50_mRna</th>\n",
        "      <th>name</th>\n",
        "      <th>Complete_TCGA_ID</th>\n",
        "      <th>Gender</th>\n",
        "      <th>Age_at_Initial_Pathologic_Diagnosis</th>\n",
        "      <th>ER_Status</th>\n",
        "      <th>PR_Status</th>\n",
        "      <th>HER2_Final_Status</th>\n",
        "      <th>Tumor</th>\n",
        "      <th>Tumor_T1_Coded</th>\n",
        "      <th>Node</th>\n",
        "      <th>Node_Coded</th>\n",
        "      <th>Metastasis</th>\n",
        "      <th>Metastasis_Coded</th>\n",
        "      <th>AJCC_Stage</th>\n",
        "      <th>Converted_Stage</th>\n",
        "      <th>Survival_Data_Form</th>\n",
        "      <th>Vital_Status</th>\n",
        "      <th>Days_to_Date_of_Last_Contact</th>\n",
        "      <th></th>\n",
        "    </tr>\n",
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
        "      <th>0 </th>\n",
        "      <td>          Metastatic</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.ded1efed-b3b9-4d1a-b4c9-b595543fc461.1...</td>\n",
        "      <td> TCGA-BH-A18V</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 48</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td> DECEASED</td>\n",
        "      <td>            1555</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>1 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.4d12d021-3673-4e14-9fd9-033f811f87da.1...</td>\n",
        "      <td> TCGA-A2-A04U</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 47</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             670</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>2 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.3e57b40c-7079-4f05-bf37-f560304966c1.1...</td>\n",
        "      <td> TCGA-AR-A0TS</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 46</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage II</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1138</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>3 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.78e00469-0dd6-490e-93f1-068b9a386839.1...</td>\n",
        "      <td> TCGA-BH-A18K</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 46</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>         Stage I</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td> enrollment</td>\n",
        "      <td> DECEASED</td>\n",
        "      <td>            2547</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>4 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.46262a6c-8a11-4bb9-8851-8b6e44c95288.1...</td>\n",
        "      <td> TCGA-E2-A150</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 48</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             591</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>5 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.c1dc3f35-324b-4a69-b32c-24652ccf9e3a.1...</td>\n",
        "      <td> TCGA-AN-A0FX</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 52</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              10</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>6 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0.1...</td>\n",
        "      <td> TCGA-A1-A0SO</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 67</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIB</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             852</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>7 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.ce045098-cbfb-4c73-9bbe-6a1d677ae0b0.1...</td>\n",
        "      <td> TCGA-A8-A07R</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 80</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td> Equivocal</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N3</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIC</td>\n",
        "      <td>    Stage IIIC</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             273</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>8 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.79d7a589-60bd-4b4a-89c1-d557fe24c733.1...</td>\n",
        "      <td> TCGA-A2-A04T</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            2246</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>9 </th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.d9f827bb-2498-49b0-aa85-71cb554eb926.1...</td>\n",
        "      <td> TCGA-E2-A14X</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 55</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td>    Stage IIIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             692</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.6d2744ba-4817-482b-ad46-2e4e0897ad88.1...</td>\n",
        "      <td> TCGA-BH-A0B3</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 53</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1203</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>11</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.920e47c0-1b19-46e6-b1db-b5fd95e44df0.1...</td>\n",
        "      <td> TCGA-A2-A0ST</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1643</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>12</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.4808bc63-000a-4a49-a25b-4b817ca5ea54.1...</td>\n",
        "      <td> TCGA-AO-A0J4</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 41</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage IA</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             294</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>13</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.6e45dd01-225d-4871-9a3a-f591808ad234.1...</td>\n",
        "      <td> TCGA-E2-A14N</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 37</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIB</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1350</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>14</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.2e9c893c-1d72-49a7-8755-1ede20b26fcf.1...</td>\n",
        "      <td> TCGA-B6-A0IQ</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 40</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            4284</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>15</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.a63583ca-0ef2-4417-b435-5f3a6951d0c2.1...</td>\n",
        "      <td> TCGA-A1-A0SK</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 54</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td> DECEASED</td>\n",
        "      <td>             594</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>16</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.1fe98b05-6803-4803-83cd-a59e794b956e.1...</td>\n",
        "      <td> TCGA-AO-A0J6</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 61</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             775</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>17</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.95c7abfa-a417-4d81-96c2-a952a081d997.1...</td>\n",
        "      <td> TCGA-E2-A159</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 50</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             515</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>18</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.74cba80b-7677-41d6-ab22-10f1a962ba2f.1...</td>\n",
        "      <td> TCGA-AN-A0XU</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 54</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              10</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>19</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.2ad8d416-08a4-4e6f-947e-d74269d02ab1.1...</td>\n",
        "      <td> TCGA-A2-A0D2</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 45</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1027</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>20</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.9f440cd6-d55f-4cb6-a433-637ef1f9d38f.1...</td>\n",
        "      <td> TCGA-D8-A142</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 74</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIB</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             425</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>21</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.a8a7a335-8e21-4f24-b48b-8764caa21329.1...</td>\n",
        "      <td> TCGA-BH-A18G</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 81</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>         Stage X</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              61</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>22</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c.1...</td>\n",
        "      <td> TCGA-E2-A1AZ</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 63</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIB</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1964</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>23</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.43326f71-c61c-410b-af4b-c71a054e27c9.1...</td>\n",
        "      <td> TCGA-E2-A158</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 43</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             450</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>24</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.dea20128-b180-4da1-9da5-0f00bea3b1ab.1...</td>\n",
        "      <td> TCGA-AR-A0U0</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 73</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage II</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>               8</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>25</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.c09e8a88-5a82-4fd6-8d03-ef3ecb988003.1...</td>\n",
        "      <td> TCGA-AN-A0G0</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 56</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              16</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>26</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.ad46ed65-3cc2-4956-9d90-3e1edca24417.1...</td>\n",
        "      <td> TCGA-B6-A0RE</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 61</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> TX</td>\n",
        "      <td>     NaN</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> [Not Available]</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            6434</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>27</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.1013446f-5beb-485d-809a-efe81a2138dd.1...</td>\n",
        "      <td> TCGA-BH-A0DL</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 64</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1467</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>28</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.77daa4a6-93c2-4455-a173-ead372d92010.1...</td>\n",
        "      <td> TCGA-A8-A07U</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 66</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td>    Stage IIIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             303</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>29</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.a2c80f8e-f08d-4574-90a0-f0651c0a9b1b.1...</td>\n",
        "      <td> TCGA-E2-A1B5</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 46</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             774</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>30</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.b7f491a9-eddf-43b1-9baf-862db2d50383.1...</td>\n",
        "      <td> TCGA-A7-A13E</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             326</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>31</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.7953e62d-4871-4928-a2ba-a38c740134e1.1...</td>\n",
        "      <td> TCGA-AO-A0JL</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 59</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1319</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>32</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.6d066a72-f59f-45a8-ab90-216000b36da4.1...</td>\n",
        "      <td> TCGA-AR-A1AR</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 50</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage III</td>\n",
        "      <td>    Stage IIIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td> DECEASED</td>\n",
        "      <td> [Not Available]</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>33</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.f77e9ef0-0a62-426b-98d9-6813edeb63a5.1...</td>\n",
        "      <td> TCGA-B6-A0IJ</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 42</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td>     Stage IIB</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            5383</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>34</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.5cd42d4a-5971-4a01-8c10-99321105a864.1...</td>\n",
        "      <td> TCGA-AO-A124</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 38</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            3119</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>35</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93.1...</td>\n",
        "      <td> TCGA-BH-A0AV</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 52</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>         Stage I</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1180</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>36</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.2877059f-b560-413b-b8be-40d9fde8fbcf.1...</td>\n",
        "      <td> TCGA-AR-A0TU</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 35</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage II</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             360</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>37</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.9d04c180-7c23-490e-92cf-c018629b8b7f.1...</td>\n",
        "      <td> TCGA-A7-A0DA</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             373</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>38</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.1ee60bda-48df-4288-90cb-480fbfbc5d50.1...</td>\n",
        "      <td> TCGA-BH-A0HL</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 56</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              72</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>39</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.b12c9095-55c7-4add-9e22-3d65eeef2040.1...</td>\n",
        "      <td> TCGA-C8-A12V</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 55</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>               0</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>40</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.6f0cf450-76f1-489d-9890-5093816c0680.1...</td>\n",
        "      <td> TCGA-BH-A0HN</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 67</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage IA</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             516</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>41</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.0b743ba9-a340-46a0-9276-a5ddd3ee69d6.1...</td>\n",
        "      <td> TCGA-A8-A07O</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 51</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             304</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>42</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.299add94-3b97-41a6-9fd4-c572f88982d5.1...</td>\n",
        "      <td> TCGA-AN-A0FL</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             230</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>43</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.39ca8590-3733-4b61-9a46-4ec5e6e0501e.1...</td>\n",
        "      <td> TCGA-BH-A0BL</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 35</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>         Stage I</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1339</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>44</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.f9739b94-ac64-40d5-bfdd-041a412976c4.1...</td>\n",
        "      <td> TCGA-AR-A0TP</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 43</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage II</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            2392</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>45</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.5162ef6d-6978-4ff7-b385-a59325cefe17.1...</td>\n",
        "      <td> TCGA-C8-A131</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 82</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage III</td>\n",
        "      <td>    Stage IIIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>               0</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>46</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.4a93eaee-d821-4640-a441-255008aaf3b4.1...</td>\n",
        "      <td> TCGA-AO-A128</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 61</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            2877</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>47</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.7175b3eb-5198-4d7f-b205-91ae8df344b4.1...</td>\n",
        "      <td> TCGA-B6-A0I2</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 45</td>\n",
        "      <td> Performed but Not Available</td>\n",
        "      <td> Performed but Not Available</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage IA</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            4360</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>48</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.98703904-572d-4220-b959-a1293a2e1c33.1...</td>\n",
        "      <td> TCGA-AR-A1AJ</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 83</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>         Stage I</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1604</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>49</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.3af60b03-66c3-48a1-a42b-1e05fdb529c4.1...</td>\n",
        "      <td> TCGA-A7-A13D</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 46</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             267</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>50</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.a09baab9-3eac-4271-9c12-2684642f8869.1...</td>\n",
        "      <td> TCGA-AN-A04D</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 58</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>              52</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>51</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.4bf5f56d-448a-426a-8edc-f1bdbf6a8d55.1...</td>\n",
        "      <td> TCGA-D8-A143</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 51</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             431</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>52</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.fac9101c-a974-4415-9eac-d2d433d02b13.1...</td>\n",
        "      <td> TCGA-BH-A0E0</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 38</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N3</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIC</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             133</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>53</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.76a625e9-22b3-42b8-8813-27c133d0b248.1...</td>\n",
        "      <td> TCGA-E2-A14R</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 62</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             845</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>54</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.62dd11c2-2271-45e7-b753-d0f0d79fdf23.1...</td>\n",
        "      <td> TCGA-A2-A0CM</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 40</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIA</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td>   followup</td>\n",
        "      <td> DECEASED</td>\n",
        "      <td>             754</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>55</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.2b721e04-5452-4b34-b3df-c6cdd04e87b1.1...</td>\n",
        "      <td> TCGA-B6-A0RT</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 39</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            2721</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>56</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.52ff562f-6a13-435a-acab-16a064633b1d.1...</td>\n",
        "      <td> TCGA-AR-A1AI</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 47</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage II</td>\n",
        "      <td>     Stage IIA</td>\n",
        "      <td> enrollment</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1881</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>57</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.d71e12c1-d92c-4cb6-8244-d100b2ef1c43.1...</td>\n",
        "      <td> TCGA-A2-A04Q</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 48</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T1</td>\n",
        "      <td>      T1</td>\n",
        "      <td> N0</td>\n",
        "      <td> Negative</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>        Stage IA</td>\n",
        "      <td>       Stage I</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>            1275</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>58</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19.1...</td>\n",
        "      <td> TCGA-A2-A0YJ</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 39</td>\n",
        "      <td>                    Positive</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T3</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N2</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>      Stage IIIA</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             565</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>59</th>\n",
        "      <td> Primary solid Tumor</td>\n",
        "      <td> Basal-like</td>\n",
        "      <td> unc.edu.7f57b9e7-1b1b-4e07-beb4-b877b7651f7b.1...</td>\n",
        "      <td> TCGA-A2-A0YE</td>\n",
        "      <td> FEMALE</td>\n",
        "      <td> 48</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>                    Negative</td>\n",
        "      <td>  Negative</td>\n",
        "      <td> T2</td>\n",
        "      <td> T_Other</td>\n",
        "      <td> N1</td>\n",
        "      <td> Positive</td>\n",
        "      <td> M0</td>\n",
        "      <td> Negative</td>\n",
        "      <td>       Stage IIB</td>\n",
        "      <td> No_Conversion</td>\n",
        "      <td>   followup</td>\n",
        "      <td>   LIVING</td>\n",
        "      <td>             553</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th></th>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "<p>919 rows \u00d7 33 columns</p>\n",
        "</div>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 22,
       "text": [
        "            Sample Type  PAM50_mRna  \\\n",
        "0            Metastatic  Basal-like   \n",
        "1   Primary solid Tumor  Basal-like   \n",
        "2   Primary solid Tumor  Basal-like   \n",
        "3   Primary solid Tumor  Basal-like   \n",
        "4   Primary solid Tumor  Basal-like   \n",
        "5   Primary solid Tumor  Basal-like   \n",
        "6   Primary solid Tumor  Basal-like   \n",
        "7   Primary solid Tumor  Basal-like   \n",
        "8   Primary solid Tumor  Basal-like   \n",
        "9   Primary solid Tumor  Basal-like   \n",
        "10  Primary solid Tumor  Basal-like   \n",
        "11  Primary solid Tumor  Basal-like   \n",
        "12  Primary solid Tumor  Basal-like   \n",
        "13  Primary solid Tumor  Basal-like   \n",
        "14  Primary solid Tumor  Basal-like   \n",
        "15  Primary solid Tumor  Basal-like   \n",
        "16  Primary solid Tumor  Basal-like   \n",
        "17  Primary solid Tumor  Basal-like   \n",
        "18  Primary solid Tumor  Basal-like   \n",
        "19  Primary solid Tumor  Basal-like   \n",
        "20  Primary solid Tumor  Basal-like   \n",
        "21  Primary solid Tumor  Basal-like   \n",
        "22  Primary solid Tumor  Basal-like   \n",
        "23  Primary solid Tumor  Basal-like   \n",
        "24  Primary solid Tumor  Basal-like   \n",
        "25  Primary solid Tumor  Basal-like   \n",
        "26  Primary solid Tumor  Basal-like   \n",
        "27  Primary solid Tumor  Basal-like   \n",
        "28  Primary solid Tumor  Basal-like   \n",
        "29  Primary solid Tumor  Basal-like   \n",
        "30  Primary solid Tumor  Basal-like   \n",
        "31  Primary solid Tumor  Basal-like   \n",
        "32  Primary solid Tumor  Basal-like   \n",
        "33  Primary solid Tumor  Basal-like   \n",
        "34  Primary solid Tumor  Basal-like   \n",
        "35  Primary solid Tumor  Basal-like   \n",
        "36  Primary solid Tumor  Basal-like   \n",
        "37  Primary solid Tumor  Basal-like   \n",
        "38  Primary solid Tumor  Basal-like   \n",
        "39  Primary solid Tumor  Basal-like   \n",
        "40  Primary solid Tumor  Basal-like   \n",
        "41  Primary solid Tumor  Basal-like   \n",
        "42  Primary solid Tumor  Basal-like   \n",
        "43  Primary solid Tumor  Basal-like   \n",
        "44  Primary solid Tumor  Basal-like   \n",
        "45  Primary solid Tumor  Basal-like   \n",
        "46  Primary solid Tumor  Basal-like   \n",
        "47  Primary solid Tumor  Basal-like   \n",
        "48  Primary solid Tumor  Basal-like   \n",
        "49  Primary solid Tumor  Basal-like   \n",
        "50  Primary solid Tumor  Basal-like   \n",
        "51  Primary solid Tumor  Basal-like   \n",
        "52  Primary solid Tumor  Basal-like   \n",
        "53  Primary solid Tumor  Basal-like   \n",
        "54  Primary solid Tumor  Basal-like   \n",
        "55  Primary solid Tumor  Basal-like   \n",
        "56  Primary solid Tumor  Basal-like   \n",
        "57  Primary solid Tumor  Basal-like   \n",
        "58  Primary solid Tumor  Basal-like   \n",
        "59  Primary solid Tumor  Basal-like   \n",
        "                    ...         ...   \n",
        "\n",
        "                                                 name Complete_TCGA_ID  \\\n",
        "0   unc.edu.ded1efed-b3b9-4d1a-b4c9-b595543fc461.1...     TCGA-BH-A18V   \n",
        "1   unc.edu.4d12d021-3673-4e14-9fd9-033f811f87da.1...     TCGA-A2-A04U   \n",
        "2   unc.edu.3e57b40c-7079-4f05-bf37-f560304966c1.1...     TCGA-AR-A0TS   \n",
        "3   unc.edu.78e00469-0dd6-490e-93f1-068b9a386839.1...     TCGA-BH-A18K   \n",
        "4   unc.edu.46262a6c-8a11-4bb9-8851-8b6e44c95288.1...     TCGA-E2-A150   \n",
        "5   unc.edu.c1dc3f35-324b-4a69-b32c-24652ccf9e3a.1...     TCGA-AN-A0FX   \n",
        "6   unc.edu.e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0.1...     TCGA-A1-A0SO   \n",
        "7   unc.edu.ce045098-cbfb-4c73-9bbe-6a1d677ae0b0.1...     TCGA-A8-A07R   \n",
        "8   unc.edu.79d7a589-60bd-4b4a-89c1-d557fe24c733.1...     TCGA-A2-A04T   \n",
        "9   unc.edu.d9f827bb-2498-49b0-aa85-71cb554eb926.1...     TCGA-E2-A14X   \n",
        "10  unc.edu.6d2744ba-4817-482b-ad46-2e4e0897ad88.1...     TCGA-BH-A0B3   \n",
        "11  unc.edu.920e47c0-1b19-46e6-b1db-b5fd95e44df0.1...     TCGA-A2-A0ST   \n",
        "12  unc.edu.4808bc63-000a-4a49-a25b-4b817ca5ea54.1...     TCGA-AO-A0J4   \n",
        "13  unc.edu.6e45dd01-225d-4871-9a3a-f591808ad234.1...     TCGA-E2-A14N   \n",
        "14  unc.edu.2e9c893c-1d72-49a7-8755-1ede20b26fcf.1...     TCGA-B6-A0IQ   \n",
        "15  unc.edu.a63583ca-0ef2-4417-b435-5f3a6951d0c2.1...     TCGA-A1-A0SK   \n",
        "16  unc.edu.1fe98b05-6803-4803-83cd-a59e794b956e.1...     TCGA-AO-A0J6   \n",
        "17  unc.edu.95c7abfa-a417-4d81-96c2-a952a081d997.1...     TCGA-E2-A159   \n",
        "18  unc.edu.74cba80b-7677-41d6-ab22-10f1a962ba2f.1...     TCGA-AN-A0XU   \n",
        "19  unc.edu.2ad8d416-08a4-4e6f-947e-d74269d02ab1.1...     TCGA-A2-A0D2   \n",
        "20  unc.edu.9f440cd6-d55f-4cb6-a433-637ef1f9d38f.1...     TCGA-D8-A142   \n",
        "21  unc.edu.a8a7a335-8e21-4f24-b48b-8764caa21329.1...     TCGA-BH-A18G   \n",
        "22  unc.edu.fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c.1...     TCGA-E2-A1AZ   \n",
        "23  unc.edu.43326f71-c61c-410b-af4b-c71a054e27c9.1...     TCGA-E2-A158   \n",
        "24  unc.edu.dea20128-b180-4da1-9da5-0f00bea3b1ab.1...     TCGA-AR-A0U0   \n",
        "25  unc.edu.c09e8a88-5a82-4fd6-8d03-ef3ecb988003.1...     TCGA-AN-A0G0   \n",
        "26  unc.edu.ad46ed65-3cc2-4956-9d90-3e1edca24417.1...     TCGA-B6-A0RE   \n",
        "27  unc.edu.1013446f-5beb-485d-809a-efe81a2138dd.1...     TCGA-BH-A0DL   \n",
        "28  unc.edu.77daa4a6-93c2-4455-a173-ead372d92010.1...     TCGA-A8-A07U   \n",
        "29  unc.edu.a2c80f8e-f08d-4574-90a0-f0651c0a9b1b.1...     TCGA-E2-A1B5   \n",
        "30  unc.edu.b7f491a9-eddf-43b1-9baf-862db2d50383.1...     TCGA-A7-A13E   \n",
        "31  unc.edu.7953e62d-4871-4928-a2ba-a38c740134e1.1...     TCGA-AO-A0JL   \n",
        "32  unc.edu.6d066a72-f59f-45a8-ab90-216000b36da4.1...     TCGA-AR-A1AR   \n",
        "33  unc.edu.f77e9ef0-0a62-426b-98d9-6813edeb63a5.1...     TCGA-B6-A0IJ   \n",
        "34  unc.edu.5cd42d4a-5971-4a01-8c10-99321105a864.1...     TCGA-AO-A124   \n",
        "35  unc.edu.afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93.1...     TCGA-BH-A0AV   \n",
        "36  unc.edu.2877059f-b560-413b-b8be-40d9fde8fbcf.1...     TCGA-AR-A0TU   \n",
        "37  unc.edu.9d04c180-7c23-490e-92cf-c018629b8b7f.1...     TCGA-A7-A0DA   \n",
        "38  unc.edu.1ee60bda-48df-4288-90cb-480fbfbc5d50.1...     TCGA-BH-A0HL   \n",
        "39  unc.edu.b12c9095-55c7-4add-9e22-3d65eeef2040.1...     TCGA-C8-A12V   \n",
        "40  unc.edu.6f0cf450-76f1-489d-9890-5093816c0680.1...     TCGA-BH-A0HN   \n",
        "41  unc.edu.0b743ba9-a340-46a0-9276-a5ddd3ee69d6.1...     TCGA-A8-A07O   \n",
        "42  unc.edu.299add94-3b97-41a6-9fd4-c572f88982d5.1...     TCGA-AN-A0FL   \n",
        "43  unc.edu.39ca8590-3733-4b61-9a46-4ec5e6e0501e.1...     TCGA-BH-A0BL   \n",
        "44  unc.edu.f9739b94-ac64-40d5-bfdd-041a412976c4.1...     TCGA-AR-A0TP   \n",
        "45  unc.edu.5162ef6d-6978-4ff7-b385-a59325cefe17.1...     TCGA-C8-A131   \n",
        "46  unc.edu.4a93eaee-d821-4640-a441-255008aaf3b4.1...     TCGA-AO-A128   \n",
        "47  unc.edu.7175b3eb-5198-4d7f-b205-91ae8df344b4.1...     TCGA-B6-A0I2   \n",
        "48  unc.edu.98703904-572d-4220-b959-a1293a2e1c33.1...     TCGA-AR-A1AJ   \n",
        "49  unc.edu.3af60b03-66c3-48a1-a42b-1e05fdb529c4.1...     TCGA-A7-A13D   \n",
        "50  unc.edu.a09baab9-3eac-4271-9c12-2684642f8869.1...     TCGA-AN-A04D   \n",
        "51  unc.edu.4bf5f56d-448a-426a-8edc-f1bdbf6a8d55.1...     TCGA-D8-A143   \n",
        "52  unc.edu.fac9101c-a974-4415-9eac-d2d433d02b13.1...     TCGA-BH-A0E0   \n",
        "53  unc.edu.76a625e9-22b3-42b8-8813-27c133d0b248.1...     TCGA-E2-A14R   \n",
        "54  unc.edu.62dd11c2-2271-45e7-b753-d0f0d79fdf23.1...     TCGA-A2-A0CM   \n",
        "55  unc.edu.2b721e04-5452-4b34-b3df-c6cdd04e87b1.1...     TCGA-B6-A0RT   \n",
        "56  unc.edu.52ff562f-6a13-435a-acab-16a064633b1d.1...     TCGA-AR-A1AI   \n",
        "57  unc.edu.d71e12c1-d92c-4cb6-8244-d100b2ef1c43.1...     TCGA-A2-A04Q   \n",
        "58  unc.edu.330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19.1...     TCGA-A2-A0YJ   \n",
        "59  unc.edu.7f57b9e7-1b1b-4e07-beb4-b877b7651f7b.1...     TCGA-A2-A0YE   \n",
        "                                                  ...              ...   \n",
        "\n",
        "    Gender  Age_at_Initial_Pathologic_Diagnosis                    ER_Status  \\\n",
        "0   FEMALE                                   48                     Negative   \n",
        "1   FEMALE                                   47                     Negative   \n",
        "2   FEMALE                                   46                     Negative   \n",
        "3   FEMALE                                   46                     Positive   \n",
        "4   FEMALE                                   48                     Negative   \n",
        "5   FEMALE                                   52                     Negative   \n",
        "6   FEMALE                                   67                     Negative   \n",
        "7   FEMALE                                   80                     Negative   \n",
        "8   FEMALE                                   62                     Negative   \n",
        "9   FEMALE                                   55                     Negative   \n",
        "10  FEMALE                                   53                     Negative   \n",
        "11  FEMALE                                   62                     Negative   \n",
        "12  FEMALE                                   41                     Negative   \n",
        "13  FEMALE                                   37                     Negative   \n",
        "14  FEMALE                                   40                     Negative   \n",
        "15  FEMALE                                   54                     Negative   \n",
        "16  FEMALE                                   61                     Negative   \n",
        "17  FEMALE                                   50                     Negative   \n",
        "18  FEMALE                                   54                     Negative   \n",
        "19  FEMALE                                   45                     Negative   \n",
        "20  FEMALE                                   74                     Negative   \n",
        "21  FEMALE                                   81                     Negative   \n",
        "22  FEMALE                                   63                     Negative   \n",
        "23  FEMALE                                   43                     Negative   \n",
        "24  FEMALE                                   73                     Negative   \n",
        "25  FEMALE                                   56                     Negative   \n",
        "26  FEMALE                                   61                     Negative   \n",
        "27  FEMALE                                   64                     Positive   \n",
        "28  FEMALE                                   66                     Negative   \n",
        "29  FEMALE                                   46                     Positive   \n",
        "30  FEMALE                                   62                     Positive   \n",
        "31  FEMALE                                   59                     Negative   \n",
        "32  FEMALE                                   50                     Negative   \n",
        "33  FEMALE                                   42                     Positive   \n",
        "34  FEMALE                                   38                     Negative   \n",
        "35  FEMALE                                   52                     Negative   \n",
        "36  FEMALE                                   35                     Negative   \n",
        "37  FEMALE                                   62                     Negative   \n",
        "38  FEMALE                                   56                     Positive   \n",
        "39  FEMALE                                   55                     Negative   \n",
        "40  FEMALE                                   67                     Positive   \n",
        "41  FEMALE                                   51                     Negative   \n",
        "42  FEMALE                                   62                     Negative   \n",
        "43  FEMALE                                   35                     Negative   \n",
        "44  FEMALE                                   43                     Positive   \n",
        "45  FEMALE                                   82                     Negative   \n",
        "46  FEMALE                                   61                     Negative   \n",
        "47  FEMALE                                   45  Performed but Not Available   \n",
        "48  FEMALE                                   83                     Positive   \n",
        "49  FEMALE                                   46                     Negative   \n",
        "50  FEMALE                                   58                     Negative   \n",
        "51  FEMALE                                   51                     Negative   \n",
        "52  FEMALE                                   38                     Negative   \n",
        "53  FEMALE                                   62                     Negative   \n",
        "54  FEMALE                                   40                     Negative   \n",
        "55  FEMALE                                   39                     Negative   \n",
        "56  FEMALE                                   47                     Negative   \n",
        "57  FEMALE                                   48                     Negative   \n",
        "58  FEMALE                                   39                     Positive   \n",
        "59  FEMALE                                   48                     Negative   \n",
        "       ...                                  ...                          ...   \n",
        "\n",
        "                      PR_Status HER2_Final_Status Tumor Tumor_T1_Coded Node  \\\n",
        "0                      Negative          Negative    T2        T_Other   N1   \n",
        "1                      Negative          Negative    T2        T_Other   N0   \n",
        "2                      Negative          Negative    T2        T_Other   N1   \n",
        "3                      Positive          Negative    T1             T1   N0   \n",
        "4                      Negative          Negative    T2        T_Other   N0   \n",
        "5                      Negative          Negative    T2        T_Other   N0   \n",
        "6                      Negative          Negative    T2        T_Other   N1   \n",
        "7                      Negative         Equivocal    T2        T_Other   N3   \n",
        "8                      Negative          Negative    T2        T_Other   N0   \n",
        "9                      Negative          Negative    T2        T_Other   N2   \n",
        "10                     Negative          Negative    T2        T_Other   N1   \n",
        "11                     Negative          Negative    T1             T1   N1   \n",
        "12                     Negative          Negative    T1             T1   N0   \n",
        "13                     Negative          Negative    T2        T_Other   N1   \n",
        "14                     Negative          Negative    T3        T_Other   N1   \n",
        "15                     Negative          Negative    T2        T_Other   N0   \n",
        "16                     Negative          Negative    T2        T_Other   N0   \n",
        "17                     Negative          Negative    T2        T_Other   N0   \n",
        "18                     Negative          Negative    T2        T_Other   N0   \n",
        "19                     Negative          Negative    T2        T_Other   N0   \n",
        "20                     Negative          Negative    T3        T_Other   N0   \n",
        "21                     Negative          Negative    T1             T1   N0   \n",
        "22                     Negative          Negative    T2        T_Other   N1   \n",
        "23                     Negative          Negative    T1             T1   N1   \n",
        "24                     Negative          Negative    T2        T_Other   N1   \n",
        "25                     Negative          Negative    T2        T_Other   N0   \n",
        "26                     Negative          Negative    TX            NaN   N0   \n",
        "27                     Negative          Negative    T2        T_Other   N0   \n",
        "28                     Positive          Negative    T2        T_Other   N2   \n",
        "29                     Positive          Negative    T2        T_Other   N0   \n",
        "30                     Negative          Negative    T2        T_Other   N1   \n",
        "31                     Negative          Negative    T2        T_Other   N2   \n",
        "32                     Negative          Negative    T1             T1   N2   \n",
        "33                     Positive          Negative    T3        T_Other   N0   \n",
        "34                     Negative          Negative    T2        T_Other   N0   \n",
        "35                     Negative          Negative    T1             T1   N0   \n",
        "36                     Negative          Negative    T2        T_Other   N0   \n",
        "37                     Negative          Negative    T2        T_Other   N0   \n",
        "38                     Positive          Negative    T2        T_Other   N1   \n",
        "39                     Negative          Negative    T2        T_Other   N0   \n",
        "40                     Positive          Negative    T1             T1   N0   \n",
        "41                     Negative          Negative    T2        T_Other   N0   \n",
        "42                     Negative          Negative    T2        T_Other   N0   \n",
        "43                     Negative          Negative    T1             T1   N0   \n",
        "44                     Negative          Negative    T2        T_Other   N0   \n",
        "45                     Negative          Negative    T2        T_Other   N2   \n",
        "46                     Negative          Negative    T2        T_Other   N0   \n",
        "47  Performed but Not Available          Negative    T1             T1   N0   \n",
        "48                     Negative          Negative    T1             T1   N0   \n",
        "49                     Positive          Negative    T2        T_Other   N0   \n",
        "50                     Negative          Negative    T2        T_Other   N1   \n",
        "51                     Negative          Negative    T2        T_Other   N0   \n",
        "52                     Negative          Negative    T3        T_Other   N3   \n",
        "53                     Negative          Negative    T2        T_Other   N0   \n",
        "54                     Negative          Negative    T2        T_Other   N0   \n",
        "55                     Negative          Negative    T3        T_Other   N1   \n",
        "56                     Negative          Negative    T2        T_Other   N0   \n",
        "57                     Negative          Negative    T1             T1   N0   \n",
        "58                     Negative          Negative    T3        T_Other   N2   \n",
        "59                     Negative          Negative    T2        T_Other   N1   \n",
        "                            ...               ...   ...            ...  ...   \n",
        "\n",
        "   Node_Coded Metastasis Metastasis_Coded       AJCC_Stage Converted_Stage  \\\n",
        "0    Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "1    Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "2    Positive         M0         Negative         Stage II   No_Conversion   \n",
        "3    Negative         M0         Negative          Stage I         Stage I   \n",
        "4    Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "5    Negative         M0         Negative        Stage IIA   No_Conversion   \n",
        "6    Positive         M0         Negative        Stage IIB       Stage IIB   \n",
        "7    Positive         M0         Negative       Stage IIIC      Stage IIIC   \n",
        "8    Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "9    Positive         M0         Negative       Stage IIIA      Stage IIIA   \n",
        "10   Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "11   Positive         M0         Negative        Stage IIA   No_Conversion   \n",
        "12   Negative         M0         Negative         Stage IA         Stage I   \n",
        "13   Positive         M0         Negative        Stage IIB       Stage IIB   \n",
        "14   Positive         M0         Negative       Stage IIIA   No_Conversion   \n",
        "15   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "16   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "17   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "18   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "19   Negative         M0         Negative        Stage IIB       Stage IIA   \n",
        "20   Negative         M0         Negative        Stage IIB       Stage IIB   \n",
        "21   Negative         M0         Negative          Stage X   No_Conversion   \n",
        "22   Positive         M0         Negative        Stage IIB       Stage IIB   \n",
        "23   Positive         M0         Negative        Stage IIA       Stage IIA   \n",
        "24   Positive         M0         Negative         Stage II   No_Conversion   \n",
        "25   Negative         M0         Negative        Stage IIA   No_Conversion   \n",
        "26   Negative         M0         Negative  [Not Available]   No_Conversion   \n",
        "27   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "28   Positive         M0         Negative       Stage IIIA      Stage IIIA   \n",
        "29   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "30   Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "31   Positive         M0         Negative       Stage IIIA   No_Conversion   \n",
        "32   Positive         M0         Negative        Stage III      Stage IIIA   \n",
        "33   Negative         M0         Negative        Stage IIB       Stage IIB   \n",
        "34   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "35   Negative         M0         Negative          Stage I         Stage I   \n",
        "36   Negative         M0         Negative         Stage II   No_Conversion   \n",
        "37   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "38   Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "39   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "40   Negative         M0         Negative         Stage IA         Stage I   \n",
        "41   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "42   Negative         M0         Negative        Stage IIA   No_Conversion   \n",
        "43   Negative         M0         Negative          Stage I         Stage I   \n",
        "44   Negative         M0         Negative         Stage II   No_Conversion   \n",
        "45   Positive         M0         Negative        Stage III      Stage IIIA   \n",
        "46   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "47   Negative         M0         Negative         Stage IA         Stage I   \n",
        "48   Negative         M0         Negative          Stage I         Stage I   \n",
        "49   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "50   Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "51   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "52   Positive         M0         Negative       Stage IIIC   No_Conversion   \n",
        "53   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "54   Negative         M0         Negative        Stage IIA       Stage IIA   \n",
        "55   Positive         M0         Negative       Stage IIIA   No_Conversion   \n",
        "56   Negative         M0         Negative         Stage II       Stage IIA   \n",
        "57   Negative         M0         Negative         Stage IA         Stage I   \n",
        "58   Positive         M0         Negative       Stage IIIA   No_Conversion   \n",
        "59   Positive         M0         Negative        Stage IIB   No_Conversion   \n",
        "          ...        ...              ...              ...             ...   \n",
        "\n",
        "   Survival_Data_Form Vital_Status Days_to_Date_of_Last_Contact      \n",
        "0          enrollment     DECEASED                         1555 ...  \n",
        "1            followup       LIVING                          670 ...  \n",
        "2          enrollment       LIVING                         1138 ...  \n",
        "3          enrollment     DECEASED                         2547 ...  \n",
        "4          enrollment       LIVING                          591 ...  \n",
        "5          enrollment       LIVING                           10 ...  \n",
        "6          enrollment       LIVING                          852 ...  \n",
        "7          enrollment       LIVING                          273 ...  \n",
        "8            followup       LIVING                         2246 ...  \n",
        "9          enrollment       LIVING                          692 ...  \n",
        "10           followup       LIVING                         1203 ...  \n",
        "11         enrollment       LIVING                         1643 ...  \n",
        "12           followup       LIVING                          294 ...  \n",
        "13         enrollment       LIVING                         1350 ...  \n",
        "14           followup       LIVING                         4284 ...  \n",
        "15           followup     DECEASED                          594 ...  \n",
        "16           followup       LIVING                          775 ...  \n",
        "17         enrollment       LIVING                          515 ...  \n",
        "18         enrollment       LIVING                           10 ...  \n",
        "19           followup       LIVING                         1027 ...  \n",
        "20           followup       LIVING                          425 ...  \n",
        "21         enrollment       LIVING                           61 ...  \n",
        "22         enrollment       LIVING                         1964 ...  \n",
        "23         enrollment       LIVING                          450 ...  \n",
        "24         enrollment       LIVING                            8 ...  \n",
        "25         enrollment       LIVING                           16 ...  \n",
        "26           followup       LIVING                         6434 ...  \n",
        "27         enrollment       LIVING                         1467 ...  \n",
        "28         enrollment       LIVING                          303 ...  \n",
        "29         enrollment       LIVING                          774 ...  \n",
        "30           followup       LIVING                          326 ...  \n",
        "31           followup       LIVING                         1319 ...  \n",
        "32         enrollment     DECEASED              [Not Available] ...  \n",
        "33           followup       LIVING                         5383 ...  \n",
        "34           followup       LIVING                         3119 ...  \n",
        "35         enrollment       LIVING                         1180 ...  \n",
        "36         enrollment       LIVING                          360 ...  \n",
        "37           followup       LIVING                          373 ...  \n",
        "38           followup       LIVING                           72 ...  \n",
        "39         enrollment       LIVING                            0 ...  \n",
        "40           followup       LIVING                          516 ...  \n",
        "41         enrollment       LIVING                          304 ...  \n",
        "42         enrollment       LIVING                          230 ...  \n",
        "43         enrollment       LIVING                         1339 ...  \n",
        "44         enrollment       LIVING                         2392 ...  \n",
        "45         enrollment       LIVING                            0 ...  \n",
        "46           followup       LIVING                         2877 ...  \n",
        "47           followup       LIVING                         4360 ...  \n",
        "48         enrollment       LIVING                         1604 ...  \n",
        "49           followup       LIVING                          267 ...  \n",
        "50         enrollment       LIVING                           52 ...  \n",
        "51           followup       LIVING                          431 ...  \n",
        "52           followup       LIVING                          133 ...  \n",
        "53         enrollment       LIVING                          845 ...  \n",
        "54           followup     DECEASED                          754 ...  \n",
        "55           followup       LIVING                         2721 ...  \n",
        "56         enrollment       LIVING                         1881 ...  \n",
        "57           followup       LIVING                         1275 ...  \n",
        "58           followup       LIVING                          565 ...  \n",
        "59           followup       LIVING                          553 ...  \n",
        "                  ...          ...                          ...      \n",
        "\n",
        "[919 rows x 33 columns]"
       ]
      }
     ],
     "prompt_number": 22
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df.Vital_Status == 'DECEASED']['OS_Time'].hist()"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 23,
       "text": [
        "<matplotlib.axes.AxesSubplot at 0x109da4110>"
       ]
      },
      {
       "metadata": {},
       "output_type": "display_data",
       "png": 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eiCgMAQ54ox0gMNoBAqMdIDDaAQKjHVCE0Q4o4OO+28emKAU44ImIwhDggLfaAQKrHSCw\n2gECqx0gsNoBRVjtgAI+7rt9bIpSgAOeiCgMAQ54ox0gMNoBAqMdIDDaAQKjHVCE0Q4o4OO+28em\nKAU44ImIwhDggLfaAQKrHSCw2gECqx0gsNoBRVjtgAI+7rt9bIpSRT/wg4goStOn34KBgbNq1582\nbQbOnz+jdv24BDjgjXaAwGgHCIx2gMBoBwiMdkARRjugwGj77mvDXe/70Q8MTMwfOxrgioaIKAwB\nDnirHSCw2gECqx0gsNoBAqsdUITVDijg577bagfEKsABT0QUhgAHvNEOEBjtAIHRDhAY7QCB0Q4o\nwmgHFPDzc86NdkCsAhzwRERhCHDAW+0AgdUOEFjtAIHVDhBY7YAirHZAAe7gkxfggCciCkOAA95o\nBwiMdoDAaAcIjHaAwGgHFGG0AwpwB5+8AAc8EVEYAhzwVjtAYLUDBFY7QGC1AwRWO6AIqx1QgDv4\n5AU44ImIwhDggDfaAQKjHSAw2gECox0gMNoBRRjtgALcwScvwAFPRBSGAAe81Q4QWO0AgdUOEFjt\nAIHVDijCagcU4A4+eQEOeCKiMAQ44I12gMBoBwiMdoDAaAcIjHZAEUY7oAB38MkL8Ad+EFGhyUil\nJuYPvQhZgO/BW+0AgdUOEFjtAIHVDhBY7YAi7Bif/gqu/USlOG8do/yeFqt47fgFOOCJiMIQ4IA3\n2gECox0gMNoBAqMdIDDaAUUY7QCB0Q4QGO2AWAU44ImIwjCuAZ/JZLB48WLkcjksWbIkqqaYWe0A\ngdUOEFjtAIHVDhBY7YAirHaAwGoHCKx2QKzG9Vk0qVQK1lrccsstUfUQEVFExr2icU7zI+CVMNoB\nAqMdIDDaAQKjHSAw2gFFGO0AgdEOEBjtgFiNa8CnUince++9uOuuu/DCCy9E1URERBEY14rmyJEj\nqKmpwXvvvYcVK1Zg/vz5WLZsWf73169fj0wmAwCoqqpCNpvNfzXbyPelGLk/NNSHa/swM/zcdvi/\nUd8feezG3x95mrivL923n3hM4/r4xGMj938FIKt4fenpuwBsVry+dH/kMa3rF7s/1tdf1NeX7o/2\n+kvi+tL9jx+z1hadT3Het9aira0NAPLzMjIuItu2bXO/+MUv8vfH8qLb2trczTevc4BL4NYhPLZ7\n+Kstkrh+sSbN6zvh+tI5JXn9cl93SV4/zqaoX/9j7Uri7W+0Jq23/4789X0RZUvFK5qLFy9iYGAA\nAHDhwgW88soraGhoGN+/Nokw2gECox0gMNoBAqMdIDDaAUUY7QCB0Q4QGO2AWFW8ounv78eDDz4I\nALhy5Qq++c1vYuXKlZGFERHR+FQ84GfPno2urq4oWxJi4d+/2lY7QGDh5zkZ5YYbWfjXBPjZZcGm\nZPErWYmIJqgAB7zRDhAY7QCB0Q4QGO0AgdEOKMJoBwiMdoDAaAfEKsABT0QUhgAHvNUOEFjtAIHV\nDhBY7QCB1Q4owmoHCKx2gMBqB8SKP9GJiEj5J1pNmzYD58+fifzlBjjgjXaAwGgHCIx2gMBoBwiM\ndkARRjtAYLQDBGb4vyM/0UrHwEA8/7gEuKIhIgpDgAPeagcIrHaAwGoHCKx2gMBqBxRhtQMEVjtA\nYLUDYhXggCciCkOAA95oBwiMdoDAaAcIjHaAwGgHFGG0AwRGO0BgtANiFeCAJyIKQ4AD3moHCKx2\ngMBqBwisdoDAagcUYbUDBFY7QGC1A2IV4IAnIgpDgAPeaAcIjHaAwGgHCIx2gMBoBxRhtAMERjtA\nYLQDYhXggCciCkOAA95qBwisdoDAagcIrHaAwGoHFGG1AwRWO0BgtQNiFeCAJyIKQ4AD3mgHCIx2\ngMBoBwiMdoDAaAcUYbQDBEY7QGC0A2IV4IAnIgpDgAPeagcIrHaAwGoHCKx2gMBqBxRhtQMEVjtA\nYLUDYhXggCciCkOAA95oBwiMdoDAaAcIjHaAwGgHFGG0AwRGO0BgtANiFeCAJyIKQ4AD3moHCKx2\ngMBqBwisdoDAagcUYbUDBFY7QGC1A2IV4IAnIgpDgAPeaAcIjHaAwGgHCIx2gMBoBxRhtAMERjtA\nYLQDYhXggCciCkOAA95qBwisdoDAagcIrHaAwGoHFGG1AwRWO0BgtQNiFeCAJyIKQ4AD3mgHCIx2\ngMBoBwiMdoDAaAcUYbQDBEY7QGC0A2IV4IAnIgpDgAPeagcIrHaAwGoHCKx2gMBqBxRhtQMEVjtA\nYLUDYhXggCciCkOAA95oBwiMdoDAaAcIjHaAwGgHFGG0AwRGO0BgtANiFeCAJyIKQ8UDvr29HfPn\nz8fcuXOxY8eOKJtiZrUDBFY7QGC1AwRWO0BgtQOKsNoBAqsdILDaAbGqaMAPDQ3hO9/5Dtrb23Hs\n2DHs3bsXf//736Nui0mXdoCATeVhU/l87GJT0ioa8EePHsXtt9+OTCaDKVOm4JFHHsHLL78cdVtM\nzmkHCNhUHjaVz8cuNiWtogF/6tQp3Hbbbfn7tbW1OHXqVGRRREQ0fpMreaZUKhVpxKRJkzA09Bqm\nT18d6cuVXLzYiZtueue6xy5ffhf//W/slx5Fj+bFi+jRDhD0aAcIerQDiujRDhD0aAcIerQDYlXR\ngJ81axZOnDiRv3/ixAnU1tZe9zR1dXVj/ofgww+T+b+A8+eLXSfaf7jGzrfr71G+viTOpkrPP6qm\nqF//Y+1K4u1vtCatt/+RJt2/fyPzsq6uLrqX6ZxzY32mK1eu4I477sBrr72GW2+9FUuWLMHevXux\nYMGCyMKIiGh8KnoPfvLkyfj1r3+NL3/5yxgaGkJLSwuHOxGRZyp6D56IiPwXy1eyan4RVCaTweLF\ni5HL5bBkyRIAwJkzZ7BixQrMmzcPK1euxLlzH39q1Pbt2zF37lzMnz8fr7zySiQNGzZsQDqdRkND\nQ/6xShreeecdNDQ0YO7cufj+978fedO2bdtQW1uLXC6HXC6HQ4cOJdp04sQJLF++HIsWLUJ9fT2e\ne+45ALpnVaxJ+6w+/PBDLF26FNlsFgsXLsSPf/xjALpnVaxJ+6yAa1+rk8vlsHr1tU/c0P77JzUl\nck4uYleuXHF1dXWuu7vbXbp0yTU2Nrpjx45FfZmiMpmM++CDD657bOvWrW7Hjh3OOedaW1vdE088\n4Zxz7m9/+5trbGx0ly5dct3d3a6urs4NDQ2Nu+HNN990f/nLX1x9fX1FDVevXnXOOfeFL3zBvfXW\nW84551atWuUOHToUadO2bdvcM888U/C0STX19va6zs5O55xzAwMDbt68ee7YsWOqZ1WsSfusnHPu\nwoULzjnnLl++7JYuXeoOHz6s/nYlNflwVs8884z7xje+4VavXu2c0//7JzUlcU6RvwfvwxdBuRu2\nTgcOHEBzczMAoLm5Gfv37wcAvPzyy2hqasKUKVOQyWRw++234+jRo+O+/rJlyzBjxoyKG9566y30\n9vZiYGAg/38h69atyz9PVE1A4Vkl2VRdXY1sNgsAmDp1KhYsWIBTp06pnlWxJkD3rADgpptuAgBc\nunQJQ0NDmDFjhvrbldQE6J7VyZMncfDgQWzcuDHfoX1OUpNzLvZzinzAa38RVCqVwr333ou77roL\nL7zwAgCgv78f6XQaAJBOp9Hf3w8AOH369HWf3hln61gbbnx81qxZsbTt2rULjY2NaGlpyf9vq0ZT\nT08POjs7sXTpUm/OaqTp7rvvBqB/VlevXkU2m0U6nc6vkbTPSmoCdM/qBz/4AX7+859j0qSPx5v2\nOUlNqVQq9nOKfMBH/UVQY3XkyBF0dnbi0KFD+M1vfoPDhw9f9/upVGrUxiT6SzUkZdOmTeju7kZX\nVxdqamqwZcsWlY7BwUGsWbMGO3fuxLRp0677Pa2zGhwcxEMPPYSdO3di6tSpXpzVpEmT0NXVhZMn\nT+LNN99ER0fHdb+vcVY3NllrVc/qD3/4A2bOnIlcLie+dwwkf07FmpI4p8gHfDlfBBWnmpoaAMDn\nP/95PPjggzh69CjS6TT6+voAAL29vZg5c6bYevLkScyaNSuWrrE01NbWYtasWTh58mSsbTNnzsy/\nsW/cuDG/nkqy6fLly1izZg3Wrl2LBx54AID+WY00Pfroo/kmH85qxGc/+1l89atfxTvvvKN+Vjc2\nvf3226pn9ac//QkHDhzA7Nmz0dTUhNdffx1r165VPSepad26dcmc07g+aiC4fPmymzNnjuvu7nYf\nffRRoh9kvXDhgjt//rxzzrnBwUH3xS9+0f3xj390W7duda2trc4557Zv317wAZaPPvrIHT9+3M2Z\nMyf/wYzx6u7uLvgg61gblixZ4v785z+7q1evRvJBnhubTp8+nf/1s88+65qamhJtunr1qlu7dq3b\nvHnzdY9rnlWxJu2zeu+999zZs2edc85dvHjRLVu2zL366quqZ1Wsqbe3N/80Gmc1wlrr7rvvPuec\nH3//bmxK4m0q8gHvnHMHDx508+bNc3V1de7pp5+O4xKi48ePu8bGRtfY2OgWLVqUv/YHH3zg7rnn\nHjd37ly3YsWK/Bulc8799Kc/dXV1de6OO+5w7e3tkXQ88sgjrqamxk2ZMsXV1ta6F198saKGt99+\n29XX17u6ujr33e9+N9Km3bt3u7Vr17qGhga3ePFid//997u+vr5Emw4fPuxSqZRrbGx02WzWZbNZ\nd+jQIdWzkpoOHjyoflZ//etfXS6Xc42Nja6hocH97Gc/c85V9rYdVVexJu2zGmGtzX/GivbfvxEd\nHR35pkcffTT2c+IXOhERTVD8kX1ERBMUBzwR0QTFAU9ENEFxwBMRTVAc8EREExQHPBHRBMUBT0Q0\nQXHAExFNUP8P6kVGGiTWQqEAAAAASUVORK5CYII=\n",
       "text": [
        "<matplotlib.figure.Figure at 0x10942d3d0>"
       ]
      }
     ],
     "prompt_number": 23
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df.Vital_Status == 'LIVING']['OS_Time'].hist(hold= True)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "ename": "AttributeError",
       "evalue": "Unknown property hold",
       "output_type": "pyerr",
       "traceback": [
        "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[0;31mAttributeError\u001b[0m                            Traceback (most recent call last)",
        "\u001b[0;32m<ipython-input-24-75aa82614dde>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mdf\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mdf\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mVital_Status\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;34m'LIVING'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'OS_Time'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mhist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mhold\u001b[0m\u001b[0;34m=\u001b[0m \u001b[0mTrue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
        "\u001b[0;32m/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/tools/plotting.pyc\u001b[0m in \u001b[0;36mhist_series\u001b[0;34m(self, by, ax, grid, xlabelsize, xrot, ylabelsize, yrot, figsize, **kwds)\u001b[0m\n\u001b[1;32m   2144\u001b[0m         \u001b[0mvalues\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdropna\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   2145\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2146\u001b[0;31m         \u001b[0max\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mhist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwds\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m   2147\u001b[0m         \u001b[0max\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgrid\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mgrid\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   2148\u001b[0m         \u001b[0maxes\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0marray\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0max\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
        "\u001b[0;32m/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/axes.pyc\u001b[0m in \u001b[0;36mhist\u001b[0;34m(self, x, bins, range, normed, weights, cumulative, bottom, histtype, align, orientation, rwidth, log, color, label, stacked, **kwargs)\u001b[0m\n\u001b[1;32m   8525\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mpatch\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   8526\u001b[0m                 \u001b[0mp\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mpatch\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 8527\u001b[0;31m                 \u001b[0mp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupdate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m   8528\u001b[0m                 \u001b[0;32mif\u001b[0m \u001b[0mlbl\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   8529\u001b[0m                     \u001b[0mp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mset_label\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mlbl\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
        "\u001b[0;32m/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/artist.pyc\u001b[0m in \u001b[0;36mupdate\u001b[0;34m(self, props)\u001b[0m\n\u001b[1;32m    737\u001b[0m             \u001b[0mfunc\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mgetattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'set_'\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0mk\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mNone\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    738\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mfunc\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0mNone\u001b[0m \u001b[0;32mor\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mcallable\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mfunc\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 739\u001b[0;31m                 \u001b[0;32mraise\u001b[0m \u001b[0mAttributeError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Unknown property %s'\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mk\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    740\u001b[0m             \u001b[0mfunc\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mv\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    741\u001b[0m             \u001b[0mchanged\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mTrue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
        "\u001b[0;31mAttributeError\u001b[0m: Unknown property hold"
       ]
      },
      {
       "metadata": {},
       "output_type": "display_data",
       "png": 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GvQfG/GhcrjLCvS7rr/bp7OxUSUmJioqKtH379tkYAgAwAykv/5s3b+p73/ueOjs7FYlE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\n5Q8AFqL8AcBC/wNaTKi5w7vCtgAAAABJRU5ErkJggg==\n",
       "text": [
        "<matplotlib.figure.Figure at 0x109d3a210>"
       ]
      }
     ],
     "prompt_number": 24
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df['Vital_Status'] == 'LIVING']['OS_Time'].hist?"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 25
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df['Vital_Status'] == 'LIVING']['OS_Time'].hist"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 26,
       "text": [
        "<bound method Series.hist_series of 1      670\n",
        "2     1138\n",
        "4      591\n",
        "5       10\n",
        "6      852\n",
        "7      273\n",
        "8     2246\n",
        "9      692\n",
        "10    1203\n",
        "11    1643\n",
        "12     294\n",
        "13    1350\n",
        "14    4284\n",
        "16     775\n",
        "17     515\n",
        "...\n",
        "896    2875\n",
        "898       0\n",
        "899      20\n",
        "900       0\n",
        "901      21\n",
        "902       0\n",
        "904    1228\n",
        "905      48\n",
        "907      34\n",
        "908       0\n",
        "913     587\n",
        "914     837\n",
        "915    1707\n",
        "916    1187\n",
        "917    1324\n",
        "Name: OS_Time, Length: 778, dtype: float64>"
       ]
      }
     ],
     "prompt_number": 26
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df['Vital_Status'] == 'LIVING']['OS_Time'].hist"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 27,
       "text": [
        "<bound method Series.hist_series of 1      670\n",
        "2     1138\n",
        "4      591\n",
        "5       10\n",
        "6      852\n",
        "7      273\n",
        "8     2246\n",
        "9      692\n",
        "10    1203\n",
        "11    1643\n",
        "12     294\n",
        "13    1350\n",
        "14    4284\n",
        "16     775\n",
        "17     515\n",
        "...\n",
        "896    2875\n",
        "898       0\n",
        "899      20\n",
        "900       0\n",
        "901      21\n",
        "902       0\n",
        "904    1228\n",
        "905      48\n",
        "907      34\n",
        "908       0\n",
        "913     587\n",
        "914     837\n",
        "915    1707\n",
        "916    1187\n",
        "917    1324\n",
        "Name: OS_Time, Length: 778, dtype: float64>"
       ]
      }
     ],
     "prompt_number": 27
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "df[df.Vital_Status == 'LIVING']['OS_Time'].hist"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 28,
       "text": [
        "<bound method Series.hist_series of 1      670\n",
        "2     1138\n",
        "4      591\n",
        "5       10\n",
        "6      852\n",
        "7      273\n",
        "8     2246\n",
        "9      692\n",
        "10    1203\n",
        "11    1643\n",
        "12     294\n",
        "13    1350\n",
        "14    4284\n",
        "16     775\n",
        "17     515\n",
        "...\n",
        "896    2875\n",
        "898       0\n",
        "899      20\n",
        "900       0\n",
        "901      21\n",
        "902       0\n",
        "904    1228\n",
        "905      48\n",
        "907      34\n",
        "908       0\n",
        "913     587\n",
        "914     837\n",
        "915    1707\n",
        "916    1187\n",
        "917    1324\n",
        "Name: OS_Time, Length: 778, dtype: float64>"
       ]
      }
     ],
     "prompt_number": 28
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "ax = plt.axes()\n",
      "living_os = np.array(df[df.Vital_Status == 'LIVING']['OS_Time'])\n",
      "living_os = living_os[living_os > 1825]\n",
      "print len(living_os)\n",
      "ax.hist(living_os)\n",
      "deceased_os = np.array(df[df.Vital_Status == 'DECEASED']['OS_Time'])\n",
      "deceased_os = deceased_os[deceased_os < 1095]\n",
      "print len(deceased_os)\n",
      "ax.hist(deceased_os)\n",
      "\n",
      "\n"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "79\n",
        "42\n"
       ]
      },
      {
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 29,
       "text": [
        "(array([ 6.,  2.,  3.,  1.,  5.,  3.,  4.,  6.,  4.,  8.]),\n",
        " array([  157. ,   242.1,   327.2,   412.3,   497.4,   582.5,   667.6,\n",
        "         752.7,   837.8,   922.9,  1008. ]),\n",
        " <a list of 10 Patch objects>)"
       ]
      },
      {
       "metadata": {},
       "output_type": "display_data",
       "png": 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       "text": [
        "<matplotlib.figure.Figure at 0x10933e910>"
       ]
      }
     ],
     "prompt_number": 29
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "deceased_mask = (df.Vital_Status == 'DECEASED') & (df['OS_Time'] < (3*365))\n",
      "living_mask = (df.Vital_Status == 'LIVING') & (df['OS_Time'] < (5*365))\n",
      "deceased_names = df[deceased_mask].name\n",
      "living_names = df[living_mask].name"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 30
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "rna_df = pd.read_csv('../canseq/tcga/tcga.rnaSeqV2.brca.tau.txt', sep=',')"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 31
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 99
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "pat = \"unc\\.edu\\.(.*)\\.\\d*\\.rsem\\.genes\\.normalized_results\"\n",
      "living_names = [match_group[0] for match_group in living_names.str.match(pat)]\n",
      "deceased_names = [match_group[0] for match_group in deceased_names.str.match(pat)]"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stderr",
       "text": [
        "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/strings.py:367: UserWarning: In future versions of pandas, match will change to always return a bool indexer.\n",
        "  \" always return a bool indexer.\"\"\", UserWarning)\n"
       ]
      }
     ],
     "prompt_number": 32
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "living_rsem = rna_df.ix[:, living_names]\n",
      "deceased_rsem = rna_df.ix[:, deceased_names]"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 33
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "deceased_rsem"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
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        "    <tr>\n",
        "      <th>100134869</th>\n",
        "      <td> 1.797453e-06</td>\n",
        "      <td> 1.419259e-07</td>\n",
        "      <td> 2.446509e-07</td>\n",
        "      <td>  7.656375e-07</td>\n",
        "      <td> 1.073556e-07</td>\n",
        "      <td> 2.433461e-07</td>\n",
        "      <td> 2.621854e-07</td>\n",
        "      <td> 4.108058e-07</td>\n",
        "      <td>  2.440426e-07</td>\n",
        "      <td> 4.593287e-07</td>\n",
        "      <td> 3.333725e-07</td>\n",
        "      <td> 6.038682e-07</td>\n",
        "      <td> 2.341821e-07</td>\n",
        "      <td> 9.487183e-07</td>\n",
        "      <td> 1.398782e-07</td>\n",
        "      <td> 1.694214e-07</td>\n",
        "      <td> 5.209550e-07</td>\n",
        "      <td> 9.264722e-07</td>\n",
        "      <td> 1.204358e-06</td>\n",
        "      <td> 3.611131e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10357    </th>\n",
        "      <td> 2.248426e-04</td>\n",
        "      <td> 1.366804e-05</td>\n",
        "      <td> 4.765121e-05</td>\n",
        "      <td>  2.867874e-05</td>\n",
        "      <td> 2.356971e-05</td>\n",
        "      <td> 1.661132e-05</td>\n",
        "      <td> 2.167340e-05</td>\n",
        "      <td> 1.086382e-05</td>\n",
        "      <td>  2.098130e-05</td>\n",
        "      <td> 4.710670e-05</td>\n",
        "      <td> 2.130732e-05</td>\n",
        "      <td> 3.125738e-05</td>\n",
        "      <td> 1.392086e-05</td>\n",
        "      <td> 2.529897e-05</td>\n",
        "      <td> 1.458849e-05</td>\n",
        "      <td> 1.946973e-05</td>\n",
        "      <td> 2.479213e-05</td>\n",
        "      <td> 1.140481e-05</td>\n",
        "      <td> 2.720707e-05</td>\n",
        "      <td> 1.460284e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10431    </th>\n",
        "      <td> 9.821766e-05</td>\n",
        "      <td> 1.366488e-04</td>\n",
        "      <td> 1.313625e-04</td>\n",
        "      <td>  8.088577e-05</td>\n",
        "      <td> 1.435102e-04</td>\n",
        "      <td> 1.798669e-04</td>\n",
        "      <td> 8.295820e-05</td>\n",
        "      <td> 1.218280e-04</td>\n",
        "      <td>  6.354504e-05</td>\n",
        "      <td> 7.600721e-05</td>\n",
        "      <td> 7.134431e-05</td>\n",
        "      <td> 7.861641e-05</td>\n",
        "      <td> 9.317366e-05</td>\n",
        "      <td> 1.018602e-04</td>\n",
        "      <td> 7.090746e-05</td>\n",
        "      <td> 4.682867e-05</td>\n",
        "      <td> 6.708020e-05</td>\n",
        "      <td> 8.406468e-05</td>\n",
        "      <td> 2.001179e-04</td>\n",
        "      <td> 8.403933e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>136542   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>155060   </th>\n",
        "      <td> 5.381789e-06</td>\n",
        "      <td> 3.295121e-06</td>\n",
        "      <td> 4.123380e-06</td>\n",
        "      <td>  5.382254e-06</td>\n",
        "      <td> 5.307697e-06</td>\n",
        "      <td> 2.032588e-06</td>\n",
        "      <td> 3.891341e-06</td>\n",
        "      <td> 3.842630e-06</td>\n",
        "      <td>  6.083398e-06</td>\n",
        "      <td> 2.007006e-06</td>\n",
        "      <td> 6.742844e-06</td>\n",
        "      <td> 7.279470e-06</td>\n",
        "      <td> 4.012338e-06</td>\n",
        "      <td> 5.914379e-06</td>\n",
        "      <td> 4.569233e-06</td>\n",
        "      <td> 4.027347e-06</td>\n",
        "      <td> 5.941460e-06</td>\n",
        "      <td> 2.518442e-06</td>\n",
        "      <td> 3.804135e-06</td>\n",
        "      <td> 1.358719e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>26823    </th>\n",
        "      <td> 7.997161e-08</td>\n",
        "      <td> 6.122452e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  1.143710e-07</td>\n",
        "      <td> 6.228845e-08</td>\n",
        "      <td> 1.450217e-07</td>\n",
        "      <td> 1.067934e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  7.122398e-08</td>\n",
        "      <td> 9.151405e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 8.191813e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.288122e-07</td>\n",
        "      <td> 3.528681e-07</td>\n",
        "      <td> 7.094503e-08</td>\n",
        "      <td> 1.572220e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>280660   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>317712   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>340602   </th>\n",
        "      <td> 9.537459e-08</td>\n",
        "      <td> 1.306792e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  6.966527e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.991958e-07</td>\n",
        "      <td> 1.657443e-08</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.663615e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.553388e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.908395e-07</td>\n",
        "      <td> 1.773010e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>388795   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.811013e-08</td>\n",
        "      <td> 4.409498e-08</td>\n",
        "      <td>  2.130224e-08</td>\n",
        "      <td> 4.242854e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.061342e-08</td>\n",
        "      <td> 7.652259e-09</td>\n",
        "      <td>  3.376417e-08</td>\n",
        "      <td> 4.183743e-08</td>\n",
        "      <td> 7.718815e-09</td>\n",
        "      <td> 2.001517e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.274398e-08</td>\n",
        "      <td> 3.971697e-08</td>\n",
        "      <td> 3.468972e-08</td>\n",
        "      <td> 3.643769e-08</td>\n",
        "      <td> 1.218143e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.321752e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>390284   </th>\n",
        "      <td> 2.265727e-06</td>\n",
        "      <td> 1.982668e-06</td>\n",
        "      <td> 2.754884e-06</td>\n",
        "      <td>  1.143399e-06</td>\n",
        "      <td> 1.610436e-06</td>\n",
        "      <td> 1.978470e-06</td>\n",
        "      <td> 2.067312e-06</td>\n",
        "      <td> 7.217063e-07</td>\n",
        "      <td>  3.133805e-06</td>\n",
        "      <td> 4.463056e-06</td>\n",
        "      <td> 4.352816e-06</td>\n",
        "      <td> 9.736118e-06</td>\n",
        "      <td> 2.294900e-06</td>\n",
        "      <td> 1.346113e-06</td>\n",
        "      <td> 6.326031e-06</td>\n",
        "      <td> 2.328709e-06</td>\n",
        "      <td> 3.500484e-06</td>\n",
        "      <td> 2.024853e-06</td>\n",
        "      <td> 3.178439e-06</td>\n",
        "      <td> 4.702231e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>391343   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.213372e-08</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.532157e-08</td>\n",
        "      <td>  8.486747e-09</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.923120e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.442408e-08</td>\n",
        "      <td> 3.274304e-08</td>\n",
        "      <td> 1.380738e-08</td>\n",
        "      <td> 1.846446e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>391714   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.851463e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  3.308381e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.349285e-08</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 2.609359e-08</td>\n",
        "      <td> 2.349050e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.692853e-08</td>\n",
        "      <td> 1.881166e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.239708e-08</td>\n",
        "      <td> 6.838034e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>404770   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>441362   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>442388   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>553137   </th>\n",
        "      <td> 1.212170e-08</td>\n",
        "      <td> 3.002717e-08</td>\n",
        "      <td> 3.846576e-07</td>\n",
        "      <td>  1.773101e-08</td>\n",
        "      <td> 8.047412e-08</td>\n",
        "      <td> 1.913949e-07</td>\n",
        "      <td> 6.426757e-06</td>\n",
        "      <td> 1.269170e-08</td>\n",
        "      <td>  8.982029e-08</td>\n",
        "      <td> 1.255212e-07</td>\n",
        "      <td> 7.659812e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.006848e-08</td>\n",
        "      <td> 1.091142e-06</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.330652e-08</td>\n",
        "      <td> 1.010092e-07</td>\n",
        "      <td> 1.352961e-08</td>\n",
        "      <td> 8.002858e-08</td>\n",
        "      <td> 9.777204e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>57714    </th>\n",
        "      <td> 3.250660e-06</td>\n",
        "      <td> 1.556926e-05</td>\n",
        "      <td> 2.873718e-05</td>\n",
        "      <td>  9.817471e-06</td>\n",
        "      <td> 5.649482e-06</td>\n",
        "      <td> 2.740873e-06</td>\n",
        "      <td> 3.372504e-05</td>\n",
        "      <td> 5.966974e-06</td>\n",
        "      <td>  5.358180e-06</td>\n",
        "      <td> 1.482250e-05</td>\n",
        "      <td> 1.142220e-05</td>\n",
        "      <td> 3.849033e-05</td>\n",
        "      <td> 4.410800e-06</td>\n",
        "      <td> 4.082212e-05</td>\n",
        "      <td> 2.426864e-05</td>\n",
        "      <td> 1.334215e-05</td>\n",
        "      <td> 1.851917e-05</td>\n",
        "      <td> 3.339261e-05</td>\n",
        "      <td> 1.658388e-05</td>\n",
        "      <td> 6.109519e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>645851   </th>\n",
        "      <td> 1.441191e-06</td>\n",
        "      <td> 1.151064e-06</td>\n",
        "      <td> 1.706330e-06</td>\n",
        "      <td>  1.073576e-06</td>\n",
        "      <td> 1.661732e-07</td>\n",
        "      <td> 3.784814e-07</td>\n",
        "      <td> 1.015981e-06</td>\n",
        "      <td> 1.295122e-06</td>\n",
        "      <td>  8.997917e-07</td>\n",
        "      <td> 9.074522e-06</td>\n",
        "      <td> 2.770959e-06</td>\n",
        "      <td> 1.765862e-06</td>\n",
        "      <td> 3.306793e-07</td>\n",
        "      <td> 1.796060e-06</td>\n",
        "      <td> 1.745376e-07</td>\n",
        "      <td> 1.019064e-06</td>\n",
        "      <td> 3.245160e-06</td>\n",
        "      <td> 1.143071e-06</td>\n",
        "      <td> 1.890383e-06</td>\n",
        "      <td> 2.176159e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>652919   </th>\n",
        "      <td> 7.788417e-07</td>\n",
        "      <td> 2.253626e-06</td>\n",
        "      <td> 3.904365e-07</td>\n",
        "      <td> 9.935949e-150</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 7.224712e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.248664e-246</td>\n",
        "      <td> 6.590450e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 6.230535e-07</td>\n",
        "      <td> 1.634749e-07</td>\n",
        "      <td> 1.376514e-06</td>\n",
        "      <td> 3.670379e-06</td>\n",
        "      <td> 8.562843e-07</td>\n",
        "      <td> 3.144294e-07</td>\n",
        "      <td> 1.127500e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>653553   </th>\n",
        "      <td> 3.285515e-05</td>\n",
        "      <td> 2.547867e-05</td>\n",
        "      <td> 1.165507e-04</td>\n",
        "      <td>  4.354101e-05</td>\n",
        "      <td> 1.711455e-04</td>\n",
        "      <td> 1.186159e-04</td>\n",
        "      <td> 3.137461e-05</td>\n",
        "      <td> 8.709508e-05</td>\n",
        "      <td>  6.219671e-05</td>\n",
        "      <td> 4.144862e-05</td>\n",
        "      <td> 1.283304e-04</td>\n",
        "      <td> 2.694074e-05</td>\n",
        "      <td> 7.749701e-05</td>\n",
        "      <td> 1.611846e-04</td>\n",
        "      <td> 8.859075e-05</td>\n",
        "      <td> 3.868928e-05</td>\n",
        "      <td> 4.316962e-05</td>\n",
        "      <td> 1.595772e-04</td>\n",
        "      <td> 2.911976e-05</td>\n",
        "      <td> 2.622019e-04</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>728045   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>728603   </th>\n",
        "      <td> 4.431107e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 8.891667e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>728788   </th>\n",
        "      <td> 1.416840e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  1.365386e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.331671e-08</td>\n",
        "      <td> 1.934039e-07</td>\n",
        "      <td> 9.522179e-08</td>\n",
        "      <td>  5.141924e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.961748e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 5.553813e-08</td>\n",
        "      <td> 7.730470e-08</td>\n",
        "      <td> 5.238604e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.698608e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>729884   </th>\n",
        "      <td> 1.978950e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.066438e-07</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 1.545384e-06</td>\n",
        "      <td> 7.871559e-07</td>\n",
        "      <td> 4.936490e-08</td>\n",
        "      <td> 1.329061e-07</td>\n",
        "      <td>  2.876937e-07</td>\n",
        "      <td> 3.252188e-08</td>\n",
        "      <td> 4.451144e-07</td>\n",
        "      <td> 1.363495e-07</td>\n",
        "      <td> 6.538683e-07</td>\n",
        "      <td> 1.382144e-07</td>\n",
        "      <td> 9.209250e-08</td>\n",
        "      <td> 1.177490e-07</td>\n",
        "      <td> 2.000324e-07</td>\n",
        "      <td> 5.677738e-07</td>\n",
        "      <td> 1.463743e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>8225     </th>\n",
        "      <td> 2.921617e-05</td>\n",
        "      <td> 1.064089e-05</td>\n",
        "      <td> 2.429716e-05</td>\n",
        "      <td>  2.604782e-05</td>\n",
        "      <td> 1.994005e-05</td>\n",
        "      <td> 2.299334e-05</td>\n",
        "      <td> 2.661818e-05</td>\n",
        "      <td> 3.802856e-05</td>\n",
        "      <td>  3.697443e-05</td>\n",
        "      <td> 2.742563e-05</td>\n",
        "      <td> 4.298507e-05</td>\n",
        "      <td> 2.503190e-05</td>\n",
        "      <td> 1.925500e-05</td>\n",
        "      <td> 6.959719e-05</td>\n",
        "      <td> 3.907856e-05</td>\n",
        "      <td> 3.245595e-05</td>\n",
        "      <td> 1.784818e-05</td>\n",
        "      <td> 1.859660e-05</td>\n",
        "      <td> 2.987891e-05</td>\n",
        "      <td> 2.743556e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>90288    </th>\n",
        "      <td> 3.221127e-07</td>\n",
        "      <td> 2.076973e-07</td>\n",
        "      <td> 1.056696e-07</td>\n",
        "      <td>  6.141770e-08</td>\n",
        "      <td> 1.276096e-07</td>\n",
        "      <td> 2.599759e-07</td>\n",
        "      <td> 8.804485e-08</td>\n",
        "      <td> 1.126752e-06</td>\n",
        "      <td>  4.146337e-07</td>\n",
        "      <td> 4.543313e-06</td>\n",
        "      <td> 2.602503e-06</td>\n",
        "      <td> 3.280722e-07</td>\n",
        "      <td> 4.165219e-07</td>\n",
        "      <td> 5.888616e-07</td>\n",
        "      <td> 1.672979e-07</td>\n",
        "      <td> 6.666729e-07</td>\n",
        "      <td> 1.224174e-06</td>\n",
        "      <td> 2.265814e-06</td>\n",
        "      <td> 2.109689e-07</td>\n",
        "      <td> 8.183827e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>1        </th>\n",
        "      <td> 4.623308e-06</td>\n",
        "      <td> 1.992749e-06</td>\n",
        "      <td> 2.532690e-06</td>\n",
        "      <td>  3.451246e-06</td>\n",
        "      <td> 2.853227e-06</td>\n",
        "      <td> 1.755374e-05</td>\n",
        "      <td> 2.285745e-06</td>\n",
        "      <td> 7.315108e-06</td>\n",
        "      <td>  2.716170e-06</td>\n",
        "      <td> 7.434529e-06</td>\n",
        "      <td> 8.674235e-06</td>\n",
        "      <td> 8.208854e-06</td>\n",
        "      <td> 1.766158e-06</td>\n",
        "      <td> 4.279792e-06</td>\n",
        "      <td> 1.549980e-06</td>\n",
        "      <td> 2.048380e-06</td>\n",
        "      <td> 2.311181e-06</td>\n",
        "      <td> 1.120480e-05</td>\n",
        "      <td> 2.671145e-06</td>\n",
        "      <td> 5.512144e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>29974    </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.178847e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  2.092095e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 4.939561e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.972397e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.146431e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.193868e-08</td>\n",
        "      <td> 7.113854e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>54715    </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 5.039523e-09</td>\n",
        "      <td> 1.511694e-08</td>\n",
        "      <td>  3.957278e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.524922e-08</td>\n",
        "      <td> 6.918674e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 8.245623e-09</td>\n",
        "      <td> 7.797662e-08</td>\n",
        "      <td> 5.614525e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>87769    </th>\n",
        "      <td> 2.362049e-05</td>\n",
        "      <td> 3.436414e-06</td>\n",
        "      <td> 1.562620e-06</td>\n",
        "      <td>  3.084435e-06</td>\n",
        "      <td> 2.964923e-06</td>\n",
        "      <td> 4.106002e-06</td>\n",
        "      <td> 4.393369e-06</td>\n",
        "      <td> 3.720113e-06</td>\n",
        "      <td>  4.883882e-06</td>\n",
        "      <td> 2.330275e-06</td>\n",
        "      <td> 4.666835e-06</td>\n",
        "      <td> 4.854836e-06</td>\n",
        "      <td> 2.863985e-06</td>\n",
        "      <td> 5.050402e-06</td>\n",
        "      <td> 5.871178e-06</td>\n",
        "      <td> 4.192135e-06</td>\n",
        "      <td> 3.321476e-06</td>\n",
        "      <td> 1.635261e-06</td>\n",
        "      <td> 8.513547e-07</td>\n",
        "      <td> 5.393251e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>144568   </th>\n",
        "      <td> 5.134527e-07</td>\n",
        "      <td> 6.481258e-07</td>\n",
        "      <td> 1.968846e-05</td>\n",
        "      <td>  5.156069e-07</td>\n",
        "      <td> 2.084420e-05</td>\n",
        "      <td> 5.924791e-06</td>\n",
        "      <td> 6.933368e-08</td>\n",
        "      <td> 2.954825e-06</td>\n",
        "      <td>  2.918244e-08</td>\n",
        "      <td> 2.649586e-06</td>\n",
        "      <td> 2.625219e-06</td>\n",
        "      <td> 5.744547e-08</td>\n",
        "      <td> 1.457077e-06</td>\n",
        "      <td> 3.737655e-08</td>\n",
        "      <td> 1.199773e-05</td>\n",
        "      <td> 5.970524e-08</td>\n",
        "      <td> 2.334703e-06</td>\n",
        "      <td> 2.124109e-07</td>\n",
        "      <td> 1.976916e-04</td>\n",
        "      <td> 1.408846e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>2        </th>\n",
        "      <td> 1.206022e-04</td>\n",
        "      <td> 3.539427e-04</td>\n",
        "      <td> 2.624673e-04</td>\n",
        "      <td>  3.059584e-04</td>\n",
        "      <td> 2.101238e-04</td>\n",
        "      <td> 3.298680e-04</td>\n",
        "      <td> 6.294977e-04</td>\n",
        "      <td> 4.767124e-04</td>\n",
        "      <td>  8.651702e-04</td>\n",
        "      <td> 2.151259e-04</td>\n",
        "      <td> 3.017445e-04</td>\n",
        "      <td> 2.147139e-04</td>\n",
        "      <td> 2.881606e-04</td>\n",
        "      <td> 2.078783e-04</td>\n",
        "      <td> 5.711173e-04</td>\n",
        "      <td> 6.729542e-04</td>\n",
        "      <td> 9.022020e-04</td>\n",
        "      <td> 2.206301e-04</td>\n",
        "      <td> 1.404131e-04</td>\n",
        "      <td> 2.476410e-04</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>53947    </th>\n",
        "      <td> 3.659576e-06</td>\n",
        "      <td> 4.657289e-06</td>\n",
        "      <td> 6.197037e-06</td>\n",
        "      <td>  4.720960e-05</td>\n",
        "      <td> 3.473165e-06</td>\n",
        "      <td> 5.060608e-06</td>\n",
        "      <td> 1.419854e-05</td>\n",
        "      <td> 1.355006e-05</td>\n",
        "      <td>  1.754860e-05</td>\n",
        "      <td> 9.999308e-06</td>\n",
        "      <td> 5.675277e-06</td>\n",
        "      <td> 3.348795e-06</td>\n",
        "      <td> 4.801539e-06</td>\n",
        "      <td> 4.454723e-06</td>\n",
        "      <td> 3.925246e-06</td>\n",
        "      <td> 1.039556e-05</td>\n",
        "      <td> 9.756347e-06</td>\n",
        "      <td> 1.312311e-05</td>\n",
        "      <td> 1.225137e-06</td>\n",
        "      <td> 1.400156e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>51146    </th>\n",
        "      <td> 3.483216e-08</td>\n",
        "      <td> 7.146286e-08</td>\n",
        "      <td> 5.243371e-08</td>\n",
        "      <td>  3.560150e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 7.281796e-08</td>\n",
        "      <td> 9.064733e-08</td>\n",
        "      <td>  2.251300e-07</td>\n",
        "      <td> 1.001478e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.401065e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 6.804480e-08</td>\n",
        "      <td> 3.770924e-08</td>\n",
        "      <td> 2.070084e-07</td>\n",
        "      <td> 5.789198e-08</td>\n",
        "      <td> 9.710302e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>404744   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.757447e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>8086     </th>\n",
        "      <td> 5.400690e-05</td>\n",
        "      <td> 2.042712e-05</td>\n",
        "      <td> 2.826705e-05</td>\n",
        "      <td>  2.811134e-05</td>\n",
        "      <td> 2.168992e-05</td>\n",
        "      <td> 2.155724e-05</td>\n",
        "      <td> 2.172080e-05</td>\n",
        "      <td> 2.162326e-05</td>\n",
        "      <td>  2.498475e-05</td>\n",
        "      <td> 4.057236e-05</td>\n",
        "      <td> 3.827363e-05</td>\n",
        "      <td> 4.032175e-05</td>\n",
        "      <td> 2.633969e-05</td>\n",
        "      <td> 4.158594e-05</td>\n",
        "      <td> 4.638581e-05</td>\n",
        "      <td> 2.610507e-05</td>\n",
        "      <td> 2.683204e-05</td>\n",
        "      <td> 3.741199e-05</td>\n",
        "      <td> 2.782877e-05</td>\n",
        "      <td> 3.632141e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>729522   </th>\n",
        "      <td> 1.387683e-08</td>\n",
        "      <td> 3.288734e-07</td>\n",
        "      <td> 2.094259e-08</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 8.671194e-09</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 8.044996e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  1.283979e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.206047e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.405793e-06</td>\n",
        "      <td> 3.941202e-07</td>\n",
        "      <td> 3.303034e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.760013e-07</td>\n",
        "      <td> 1.398170e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>65985    </th>\n",
        "      <td> 7.176978e-05</td>\n",
        "      <td> 1.682350e-05</td>\n",
        "      <td> 1.905693e-05</td>\n",
        "      <td>  2.404367e-05</td>\n",
        "      <td> 1.697232e-05</td>\n",
        "      <td> 2.576174e-05</td>\n",
        "      <td> 2.333984e-05</td>\n",
        "      <td> 1.178101e-05</td>\n",
        "      <td>  2.039660e-05</td>\n",
        "      <td> 1.596567e-05</td>\n",
        "      <td> 1.319579e-05</td>\n",
        "      <td> 3.469523e-05</td>\n",
        "      <td> 2.604047e-05</td>\n",
        "      <td> 2.183670e-05</td>\n",
        "      <td> 8.004885e-05</td>\n",
        "      <td> 4.038406e-05</td>\n",
        "      <td> 3.232480e-05</td>\n",
        "      <td> 4.174455e-05</td>\n",
        "      <td> 3.132338e-05</td>\n",
        "      <td> 3.061446e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>344752   </th>\n",
        "      <td> 5.466589e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.354455e-08</td>\n",
        "      <td> 1.235483e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  4.681374e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.062433e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>126767   </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 5.281223e-09</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  6.597242e-09</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.693237e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>343066   </th>\n",
        "      <td> 1.991800e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 2.992905e-08</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 1.640506e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  3.672709e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>13       </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.019858e-06</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 4.868117e-07</td>\n",
        "      <td> 9.480625e-08</td>\n",
        "      <td> 1.617264e-07</td>\n",
        "      <td>  7.179854e-08</td>\n",
        "      <td> 2.014270e-07</td>\n",
        "      <td> 6.075097e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 1.682583e-07</td>\n",
        "      <td> 1.155884e-07</td>\n",
        "      <td> 6.301463e-07</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 7.827640e-08</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>51166    </th>\n",
        "      <td> 1.754104e-05</td>\n",
        "      <td> 7.750855e-07</td>\n",
        "      <td> 1.034564e-05</td>\n",
        "      <td>  4.554675e-06</td>\n",
        "      <td> 1.614082e-06</td>\n",
        "      <td> 6.572625e-07</td>\n",
        "      <td> 1.355741e-06</td>\n",
        "      <td> 3.134349e-06</td>\n",
        "      <td>  3.173922e-06</td>\n",
        "      <td> 7.847575e-07</td>\n",
        "      <td> 1.651564e-05</td>\n",
        "      <td> 1.595833e-06</td>\n",
        "      <td> 4.488197e-07</td>\n",
        "      <td> 4.748858e-07</td>\n",
        "      <td> 1.399758e-06</td>\n",
        "      <td> 2.390292e-06</td>\n",
        "      <td> 7.965851e-06</td>\n",
        "      <td> 1.723537e-07</td>\n",
        "      <td> 1.251349e-05</td>\n",
        "      <td> 7.134686e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>79719    </th>\n",
        "      <td> 6.414559e-05</td>\n",
        "      <td> 4.275895e-05</td>\n",
        "      <td> 2.571267e-05</td>\n",
        "      <td>  3.631867e-05</td>\n",
        "      <td> 9.772432e-06</td>\n",
        "      <td> 2.915194e-05</td>\n",
        "      <td> 3.284310e-05</td>\n",
        "      <td> 2.556556e-05</td>\n",
        "      <td>  3.360114e-05</td>\n",
        "      <td> 4.671382e-05</td>\n",
        "      <td> 3.324072e-05</td>\n",
        "      <td> 9.087091e-05</td>\n",
        "      <td> 8.892603e-05</td>\n",
        "      <td> 6.282623e-05</td>\n",
        "      <td> 5.370893e-05</td>\n",
        "      <td> 2.045309e-05</td>\n",
        "      <td> 4.061970e-05</td>\n",
        "      <td> 5.859704e-05</td>\n",
        "      <td> 4.029410e-05</td>\n",
        "      <td> 6.890680e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>22848    </th>\n",
        "      <td> 5.390292e-06</td>\n",
        "      <td> 1.839766e-05</td>\n",
        "      <td> 8.190292e-06</td>\n",
        "      <td>  1.003008e-05</td>\n",
        "      <td> 1.818350e-06</td>\n",
        "      <td> 5.470124e-06</td>\n",
        "      <td> 1.249076e-05</td>\n",
        "      <td> 1.234715e-05</td>\n",
        "      <td>  9.541662e-06</td>\n",
        "      <td> 1.791499e-05</td>\n",
        "      <td> 1.064033e-05</td>\n",
        "      <td> 2.068229e-05</td>\n",
        "      <td> 6.802703e-06</td>\n",
        "      <td> 1.625221e-05</td>\n",
        "      <td> 6.229031e-06</td>\n",
        "      <td> 1.263973e-05</td>\n",
        "      <td> 1.649746e-05</td>\n",
        "      <td> 1.248004e-05</td>\n",
        "      <td> 1.234283e-05</td>\n",
        "      <td> 1.465132e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>14       </th>\n",
        "      <td> 8.485792e-05</td>\n",
        "      <td> 7.295397e-05</td>\n",
        "      <td> 1.147752e-04</td>\n",
        "      <td>  8.737947e-05</td>\n",
        "      <td> 7.319146e-05</td>\n",
        "      <td> 8.475771e-05</td>\n",
        "      <td> 1.001114e-04</td>\n",
        "      <td> 1.314327e-04</td>\n",
        "      <td>  1.024809e-04</td>\n",
        "      <td> 9.251664e-05</td>\n",
        "      <td> 1.800862e-04</td>\n",
        "      <td> 1.399536e-04</td>\n",
        "      <td> 1.859392e-04</td>\n",
        "      <td> 1.416749e-04</td>\n",
        "      <td> 1.044788e-04</td>\n",
        "      <td> 9.648713e-05</td>\n",
        "      <td> 6.569627e-05</td>\n",
        "      <td> 1.540437e-04</td>\n",
        "      <td> 1.649805e-04</td>\n",
        "      <td> 1.405399e-04</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>15       </th>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 6.262418e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  1.133866e-07</td>\n",
        "      <td> 8.837683e-08</td>\n",
        "      <td> 9.422956e-08</td>\n",
        "      <td> 5.369143e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>  6.232851e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 7.882910e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 3.311470e-08</td>\n",
        "      <td> 2.907989e-07</td>\n",
        "      <td> 4.612890e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td> 7.579324e-08</td>\n",
        "      <td> 7.196107e-08</td>\n",
        "      <td> 0.000000e+00</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>57505    </th>\n",
        "      <td> 6.644244e-06</td>\n",
        "      <td> 7.867412e-06</td>\n",
        "      <td> 8.860626e-06</td>\n",
        "      <td>  6.312502e-06</td>\n",
        "      <td> 7.522720e-06</td>\n",
        "      <td> 1.152077e-05</td>\n",
        "      <td> 8.807854e-06</td>\n",
        "      <td> 5.910472e-06</td>\n",
        "      <td>  6.697813e-06</td>\n",
        "      <td> 9.489051e-06</td>\n",
        "      <td> 1.170830e-05</td>\n",
        "      <td> 1.216589e-05</td>\n",
        "      <td> 8.896154e-06</td>\n",
        "      <td> 1.566584e-05</td>\n",
        "      <td> 5.259441e-06</td>\n",
        "      <td> 5.488663e-06</td>\n",
        "      <td> 5.758484e-06</td>\n",
        "      <td> 8.783840e-06</td>\n",
        "      <td> 7.439318e-06</td>\n",
        "      <td> 1.069291e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>80755    </th>\n",
        "      <td> 3.292233e-05</td>\n",
        "      <td> 1.633661e-05</td>\n",
        "      <td> 4.239107e-05</td>\n",
        "      <td>  2.891128e-05</td>\n",
        "      <td> 2.490836e-05</td>\n",
        "      <td> 2.916562e-05</td>\n",
        "      <td> 5.881798e-05</td>\n",
        "      <td> 3.595555e-05</td>\n",
        "      <td>  3.176734e-05</td>\n",
        "      <td> 4.462145e-05</td>\n",
        "      <td> 2.843981e-05</td>\n",
        "      <td> 3.530867e-05</td>\n",
        "      <td> 3.538068e-05</td>\n",
        "      <td> 1.942200e-05</td>\n",
        "      <td> 1.808740e-05</td>\n",
        "      <td> 3.043285e-05</td>\n",
        "      <td> 2.866304e-05</td>\n",
        "      <td> 4.416695e-05</td>\n",
        "      <td> 3.163806e-05</td>\n",
        "      <td> 4.627620e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>16       </th>\n",
        "      <td> 7.954391e-05</td>\n",
        "      <td> 4.851268e-05</td>\n",
        "      <td> 1.408186e-04</td>\n",
        "      <td>  2.110450e-04</td>\n",
        "      <td> 3.752954e-05</td>\n",
        "      <td> 5.677418e-05</td>\n",
        "      <td> 7.787435e-05</td>\n",
        "      <td> 6.888558e-05</td>\n",
        "      <td>  6.367174e-05</td>\n",
        "      <td> 7.393211e-05</td>\n",
        "      <td> 1.500594e-04</td>\n",
        "      <td> 6.922170e-05</td>\n",
        "      <td> 1.048632e-04</td>\n",
        "      <td> 2.409716e-04</td>\n",
        "      <td> 8.917113e-05</td>\n",
        "      <td> 6.387113e-05</td>\n",
        "      <td> 5.877557e-05</td>\n",
        "      <td> 1.866216e-04</td>\n",
        "      <td> 1.028807e-04</td>\n",
        "      <td> 6.374216e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>60496    </th>\n",
        "      <td> 5.308244e-05</td>\n",
        "      <td> 5.152102e-05</td>\n",
        "      <td> 2.429585e-05</td>\n",
        "      <td>  4.463740e-05</td>\n",
        "      <td> 1.094191e-05</td>\n",
        "      <td> 1.378654e-05</td>\n",
        "      <td> 3.394533e-05</td>\n",
        "      <td> 1.965162e-05</td>\n",
        "      <td>  2.955369e-05</td>\n",
        "      <td> 3.125715e-05</td>\n",
        "      <td> 1.961552e-05</td>\n",
        "      <td> 2.806767e-05</td>\n",
        "      <td> 2.054099e-05</td>\n",
        "      <td> 2.122998e-05</td>\n",
        "      <td> 2.082407e-05</td>\n",
        "      <td> 2.512662e-05</td>\n",
        "      <td> 3.615451e-05</td>\n",
        "      <td> 2.194131e-05</td>\n",
        "      <td> 4.028403e-05</td>\n",
        "      <td> 5.006279e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>132949   </th>\n",
        "      <td> 7.474610e-06</td>\n",
        "      <td> 1.418511e-05</td>\n",
        "      <td> 5.053437e-06</td>\n",
        "      <td>  9.172523e-06</td>\n",
        "      <td> 3.028027e-06</td>\n",
        "      <td> 2.652357e-06</td>\n",
        "      <td> 1.041219e-05</td>\n",
        "      <td> 6.046397e-06</td>\n",
        "      <td>  1.120017e-05</td>\n",
        "      <td> 1.013133e-05</td>\n",
        "      <td> 6.187154e-06</td>\n",
        "      <td> 1.184710e-05</td>\n",
        "      <td> 4.006096e-06</td>\n",
        "      <td> 9.491157e-06</td>\n",
        "      <td> 5.922073e-06</td>\n",
        "      <td> 1.013668e-05</td>\n",
        "      <td> 1.598537e-05</td>\n",
        "      <td> 9.633630e-06</td>\n",
        "      <td> 6.465200e-06</td>\n",
        "      <td> 5.850760e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10157    </th>\n",
        "      <td> 8.348270e-07</td>\n",
        "      <td> 2.463061e-06</td>\n",
        "      <td> 1.650513e-06</td>\n",
        "      <td>  1.078799e-06</td>\n",
        "      <td> 2.026176e-06</td>\n",
        "      <td> 8.117191e-07</td>\n",
        "      <td> 3.436024e-06</td>\n",
        "      <td> 2.584399e-06</td>\n",
        "      <td>  1.255668e-05</td>\n",
        "      <td> 1.852908e-06</td>\n",
        "      <td> 1.440596e-06</td>\n",
        "      <td> 5.140390e-06</td>\n",
        "      <td> 2.501438e-06</td>\n",
        "      <td> 1.812997e-06</td>\n",
        "      <td> 1.189560e-06</td>\n",
        "      <td> 2.034966e-05</td>\n",
        "      <td> 1.945499e-05</td>\n",
        "      <td> 1.252911e-06</td>\n",
        "      <td> 1.942100e-06</td>\n",
        "      <td> 9.293850e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>26574    </th>\n",
        "      <td> 7.669591e-05</td>\n",
        "      <td> 3.078812e-05</td>\n",
        "      <td> 6.435018e-05</td>\n",
        "      <td>  3.987809e-05</td>\n",
        "      <td> 1.930206e-05</td>\n",
        "      <td> 5.273333e-05</td>\n",
        "      <td> 6.848045e-05</td>\n",
        "      <td> 6.383621e-05</td>\n",
        "      <td>  4.529864e-05</td>\n",
        "      <td> 3.183521e-05</td>\n",
        "      <td> 8.141137e-05</td>\n",
        "      <td> 5.830224e-05</td>\n",
        "      <td> 3.831710e-05</td>\n",
        "      <td> 3.328468e-04</td>\n",
        "      <td> 5.258589e-05</td>\n",
        "      <td> 3.305213e-05</td>\n",
        "      <td> 3.074732e-05</td>\n",
        "      <td> 1.177600e-04</td>\n",
        "      <td> 1.085006e-04</td>\n",
        "      <td> 7.280831e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>9625     </th>\n",
        "      <td> 1.087188e-06</td>\n",
        "      <td> 4.384394e-07</td>\n",
        "      <td> 3.302347e-07</td>\n",
        "      <td>  2.703765e-06</td>\n",
        "      <td> 7.357584e-07</td>\n",
        "      <td> 5.371093e-07</td>\n",
        "      <td> 6.572137e-07</td>\n",
        "      <td> 1.656648e-06</td>\n",
        "      <td>  8.373700e-07</td>\n",
        "      <td> 6.366919e-07</td>\n",
        "      <td> 1.352137e-06</td>\n",
        "      <td> 1.272023e-06</td>\n",
        "      <td> 1.761870e-06</td>\n",
        "      <td> 3.363866e-07</td>\n",
        "      <td> 3.167213e-07</td>\n",
        "      <td> 6.092035e-07</td>\n",
        "      <td> 3.950688e-07</td>\n",
        "      <td> 6.280597e-07</td>\n",
        "      <td> 6.890529e-07</td>\n",
        "      <td> 1.102125e-06</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>18       </th>\n",
        "      <td> 1.078774e-06</td>\n",
        "      <td> 1.704097e-06</td>\n",
        "      <td> 1.494676e-06</td>\n",
        "      <td>  1.390386e-06</td>\n",
        "      <td> 6.330194e-07</td>\n",
        "      <td> 1.180213e-06</td>\n",
        "      <td> 2.929787e-06</td>\n",
        "      <td> 2.818772e-06</td>\n",
        "      <td>  9.688310e-06</td>\n",
        "      <td> 3.013363e-05</td>\n",
        "      <td> 5.343732e-06</td>\n",
        "      <td> 2.462633e-05</td>\n",
        "      <td> 5.914198e-06</td>\n",
        "      <td> 7.481296e-06</td>\n",
        "      <td> 2.158414e-06</td>\n",
        "      <td> 8.619755e-06</td>\n",
        "      <td> 1.293650e-05</td>\n",
        "      <td> 1.490164e-05</td>\n",
        "      <td> 5.508002e-07</td>\n",
        "      <td> 1.102350e-05</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>10349    </th>\n",
        "      <td> 8.923781e-08</td>\n",
        "      <td> 4.256044e-07</td>\n",
        "      <td> 2.550588e-07</td>\n",
        "      <td>  1.926456e-07</td>\n",
        "      <td> 8.307990e-07</td>\n",
        "      <td> 5.990535e-08</td>\n",
        "      <td> 1.731684e-06</td>\n",
        "      <td> 8.176846e-07</td>\n",
        "      <td>  8.089481e-06</td>\n",
        "      <td> 3.813757e-08</td>\n",
        "      <td> 3.385560e-07</td>\n",
        "      <td> 3.387040e-07</td>\n",
        "      <td> 1.366422e-07</td>\n",
        "      <td> 3.205415e-07</td>\n",
        "      <td> 1.738000e-07</td>\n",
        "      <td> 5.265119e-06</td>\n",
        "      <td> 1.474915e-05</td>\n",
        "      <td> 7.410228e-08</td>\n",
        "      <td> 2.936464e-08</td>\n",
        "      <td> 5.982439e-07</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th></th>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "<p>20531 rows \u00d7 42 columns</p>\n",
        "</div>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 34,
       "text": [
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        "                                            ...   \n",
        "\n",
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        "                                            ...   \n",
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        "18                                 6.330194e-07   \n",
        "10349                              8.307990e-07   \n",
        "                                            ...   \n",
        "\n",
        "           491c6c41-d1c5-4be7-bb7c-9df7275aa388  \\\n",
        "100130426                          0.000000e+00   \n",
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        "18                                 1.180213e-06   \n",
        "10349                              5.990535e-08   \n",
        "                                            ...   \n",
        "\n",
        "           d31b476c-c047-4e5f-a0cb-eff1065f0121  \\\n",
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        "18                                 2.929787e-06   \n",
        "10349                              1.731684e-06   \n",
        "                                            ...   \n",
        "\n",
        "           8dc04505-fae5-4185-b3f8-53882fbbb4fd  \\\n",
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        "18                                 2.818772e-06   \n",
        "10349                              8.176846e-07   \n",
        "                                            ...   \n",
        "\n",
        "           889f6f61-9b3a-406c-9af8-ddee74a8a19e  \\\n",
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        "18                                 9.688310e-06   \n",
        "10349                              8.089481e-06   \n",
        "                                            ...   \n",
        "\n",
        "           4dac7a33-db46-4815-8c6c-fb326959c741  \\\n",
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        "10349                              3.813757e-08   \n",
        "                                            ...   \n",
        "\n",
        "           0b3c65ed-ff55-45c9-b6a3-dd3a596a0271  \\\n",
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        "10349                              3.385560e-07   \n",
        "                                            ...   \n",
        "\n",
        "           3b48796b-8591-4d7a-a502-5c4293647156  \\\n",
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        "10349                              3.387040e-07   \n",
        "                                            ...   \n",
        "\n",
        "           8fb338fe-ffa8-45c2-857b-f713d1935330  \\\n",
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        "10349                              1.366422e-07   \n",
        "                                            ...   \n",
        "\n",
        "           1a99c4ba-6948-4054-96cd-62164ff4a6f0  \\\n",
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        "10349                              3.205415e-07   \n",
        "                                            ...   \n",
        "\n",
        "           f97f68be-6838-455c-91bf-7549543a82c3  \\\n",
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        "10349                              1.738000e-07   \n",
        "                                            ...   \n",
        "\n",
        "           08236177-a046-4cfe-a11c-a24292a1f777  \\\n",
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        "                                            ...   \n",
        "\n",
        "           7b234c36-729b-422d-8e2a-ebd42af74bce  \\\n",
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        "                                            ...   \n",
        "\n",
        "           89f9e509-5f4c-439b-b610-860f209332d2  \\\n",
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        "18                                 1.490164e-05   \n",
        "10349                              7.410228e-08   \n",
        "                                            ...   \n",
        "\n",
        "           733890d7-6557-454e-8697-fe9c619874e3  \\\n",
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        "                                            ...   \n",
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        "                                            ...      \n",
        "\n",
        "[20531 rows x 42 columns]"
       ]
      }
     ],
     "prompt_number": 34
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "genes = pd.read_csv('../canseq/tcga/entrez_immune_genes.csv', sep=',', index_col=0)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 35
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "genes"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
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        "      <td>   CCL4</td>\n",
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        "      <td>   CCL5</td>\n",
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        "      <td>  CXCL9</td>\n",
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        "      <th>3627 </th>\n",
        "      <td> CXCL10</td>\n",
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        "      <td>   GZMA</td>\n",
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        "      <td>   GZMB</td>\n",
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        "      <td>  STAT1</td>\n",
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        "      <th>915  </th>\n",
        "      <td>   CD3D</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>925  </th>\n",
        "      <td>   CD8A</td>\n",
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        "  </tbody>\n",
        "</table>\n",
        "<p>13 rows \u00d7 1 columns</p>\n",
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        "            Name\n",
        "EntrezID        \n",
        "6351        CCL4\n",
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        "915         CD3D\n",
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        "\n",
        "[13 rows x 1 columns]"
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     ],
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    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "deceased_rsem.merge?"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 37
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "deceased_rsem_immune = deceased_rsem.merge(genes, left_index=True, right_index=True)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 38
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      " deceased_rsem_immune.index = [str(genes.ix[idx].Name) for idx in deceased_rsem_immune.index]"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 39
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "living_rsem.join(genes, how='inner')"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
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        "      <th>6352 </th>\n",
        "      <td> 0.000011</td>\n",
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        "      <td> 0.000018</td>\n",
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        "      <td> 0.000067</td>\n",
        "      <td> 0.000123</td>\n",
        "      <td> 0.000395</td>\n",
        "      <td> 0.000079</td>\n",
        "      <td> 0.000144</td>\n",
        "      <td> 0.000258</td>\n",
        "      <td> 0.000174</td>\n",
        "      <td> 0.000081</td>\n",
        "      <td> 0.000129</td>\n",
        "      <td> 0.000041</td>\n",
        "      <td> 0.000022</td>\n",
        "      <td> 1.027848e-05</td>\n",
        "      <td> 0.000488</td>\n",
        "      <td> 0.000023</td>\n",
        "      <td>...</td>\n",
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        "    <tr>\n",
        "      <th>2920 </th>\n",
        "      <td> 0.000000</td>\n",
        "      <td> 0.000003</td>\n",
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        "      <td> 0.000002</td>\n",
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        "      <td> 0.000001</td>\n",
        "      <td> 0.000022</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000020</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000005</td>\n",
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        "      <td> 0.000002</td>\n",
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        "      <td> 5.118764e-08</td>\n",
        "      <td> 0.000001</td>\n",
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        "    <tr>\n",
        "      <th>4283 </th>\n",
        "      <td> 0.000004</td>\n",
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        "      <td> 0.000015</td>\n",
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        "      <td> 0.000259</td>\n",
        "      <td> 0.000063</td>\n",
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        "      <td> 0.000373</td>\n",
        "      <td> 0.000146</td>\n",
        "      <td> 0.000074</td>\n",
        "      <td> 0.000046</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 5.225933e-05</td>\n",
        "      <td> 0.000109</td>\n",
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        "    <tr>\n",
        "      <th>3627 </th>\n",
        "      <td> 0.000012</td>\n",
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        "      <td> 0.000024</td>\n",
        "      <td> 0.000068</td>\n",
        "      <td> 0.000052</td>\n",
        "      <td> 0.000042</td>\n",
        "      <td> 0.000224</td>\n",
        "      <td> 0.000478</td>\n",
        "      <td> 0.000469</td>\n",
        "      <td> 0.000415</td>\n",
        "      <td> 0.000154</td>\n",
        "      <td> 0.000138</td>\n",
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        "      <td> 0.000079</td>\n",
        "      <td> 0.000033</td>\n",
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        "      <td> 4.474604e-05</td>\n",
        "      <td> 0.001568</td>\n",
        "      <td> 0.000058</td>\n",
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        "    <tr>\n",
        "      <th>4818 </th>\n",
        "      <td> 0.000003</td>\n",
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        "      <td> 0.000127</td>\n",
        "      <td> 0.000022</td>\n",
        "      <td> 0.000012</td>\n",
        "      <td> 0.000058</td>\n",
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        "      <td> 0.000025</td>\n",
        "      <td> 0.000029</td>\n",
        "      <td> 0.000009</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 2.068295e-06</td>\n",
        "      <td> 0.000069</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>3001 </th>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000021</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 0.000003</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000017</td>\n",
        "      <td> 0.000010</td>\n",
        "      <td> 0.000082</td>\n",
        "      <td> 0.000017</td>\n",
        "      <td> 0.000010</td>\n",
        "      <td> 0.000055</td>\n",
        "      <td> 0.000054</td>\n",
        "      <td> 0.000032</td>\n",
        "      <td> 0.000020</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td> 1.555396e-06</td>\n",
        "      <td> 0.000047</td>\n",
        "      <td> 0.000007</td>\n",
        "      <td>...</td>\n",
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        "    <tr>\n",
        "      <th>3002 </th>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000022</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 0.000025</td>\n",
        "      <td> 0.000044</td>\n",
        "      <td> 0.000014</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td> 0.000046</td>\n",
        "      <td> 0.000056</td>\n",
        "      <td> 0.000037</td>\n",
        "      <td> 0.000035</td>\n",
        "      <td> 0.000003</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 1.838088e-06</td>\n",
        "      <td> 0.000082</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td>...</td>\n",
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        "    <tr>\n",
        "      <th>5551 </th>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000009</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000000</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 0.000025</td>\n",
        "      <td> 0.000007</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000022</td>\n",
        "      <td> 0.000017</td>\n",
        "      <td> 0.000012</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td> 0.000003</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 6.036557e-07</td>\n",
        "      <td> 0.000023</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>6772 </th>\n",
        "      <td> 0.000040</td>\n",
        "      <td> 0.000137</td>\n",
        "      <td> 0.000204</td>\n",
        "      <td> 0.000073</td>\n",
        "      <td> 0.000179</td>\n",
        "      <td> 0.000596</td>\n",
        "      <td> 0.000086</td>\n",
        "      <td> 0.000475</td>\n",
        "      <td> 0.000467</td>\n",
        "      <td> 0.000307</td>\n",
        "      <td> 0.000355</td>\n",
        "      <td> 0.000273</td>\n",
        "      <td> 0.000175</td>\n",
        "      <td> 0.000488</td>\n",
        "      <td> 0.000068</td>\n",
        "      <td> 0.000079</td>\n",
        "      <td> 0.000034</td>\n",
        "      <td> 1.074429e-04</td>\n",
        "      <td> 0.000793</td>\n",
        "      <td> 0.000110</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>30001</th>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 0.000021</td>\n",
        "      <td> 0.000049</td>\n",
        "      <td> 0.000015</td>\n",
        "      <td> 0.000016</td>\n",
        "      <td> 0.000026</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td> 0.000035</td>\n",
        "      <td> 0.000019</td>\n",
        "      <td> 0.000023</td>\n",
        "      <td> 0.000036</td>\n",
        "      <td> 0.000029</td>\n",
        "      <td> 0.000060</td>\n",
        "      <td> 0.000135</td>\n",
        "      <td> 0.000016</td>\n",
        "      <td> 0.000018</td>\n",
        "      <td> 0.000028</td>\n",
        "      <td> 1.239100e-05</td>\n",
        "      <td> 0.000034</td>\n",
        "      <td> 0.000030</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>915  </th>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000079</td>\n",
        "      <td> 0.000012</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000038</td>\n",
        "      <td> 0.000020</td>\n",
        "      <td> 0.000111</td>\n",
        "      <td> 0.000038</td>\n",
        "      <td> 0.000016</td>\n",
        "      <td> 0.000025</td>\n",
        "      <td> 0.000034</td>\n",
        "      <td> 0.000015</td>\n",
        "      <td> 0.000024</td>\n",
        "      <td> 0.000011</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 2.851724e-06</td>\n",
        "      <td> 0.000036</td>\n",
        "      <td> 0.000006</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>925  </th>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 0.000019</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 0.000003</td>\n",
        "      <td> 0.000004</td>\n",
        "      <td> 0.000001</td>\n",
        "      <td> 0.000010</td>\n",
        "      <td> 0.000007</td>\n",
        "      <td> 0.000047</td>\n",
        "      <td> 0.000009</td>\n",
        "      <td> 0.000005</td>\n",
        "      <td> 0.000019</td>\n",
        "      <td> 0.000025</td>\n",
        "      <td> 0.000008</td>\n",
        "      <td> 0.000010</td>\n",
        "      <td> 0.000007</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td> 3.112513e-06</td>\n",
        "      <td> 0.000026</td>\n",
        "      <td> 0.000002</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "<p>13 rows \u00d7 700 columns</p>\n",
        "</div>"
       ],
       "metadata": {},
       "output_type": "pyout",
       "prompt_number": 40,
       "text": [
        "       4d12d021-3673-4e14-9fd9-033f811f87da  \\\n",
        "6351                               0.000004   \n",
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        "4283                               0.000004   \n",
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        "4818                               0.000003   \n",
        "3001                               0.000002   \n",
        "3002                               0.000002   \n",
        "5551                               0.000001   \n",
        "6772                               0.000040   \n",
        "30001                              0.000006   \n",
        "915                                0.000002   \n",
        "925                                0.000002   \n",
        "\n",
        "       3e57b40c-7079-4f05-bf37-f560304966c1  \\\n",
        "6351                               0.000014   \n",
        "6352                               0.000114   \n",
        "2920                               0.000003   \n",
        "4283                               0.000078   \n",
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        "4818                               0.000032   \n",
        "3001                               0.000021   \n",
        "3002                               0.000022   \n",
        "5551                               0.000009   \n",
        "6772                               0.000137   \n",
        "30001                              0.000021   \n",
        "915                                0.000079   \n",
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        "\n",
        "       46262a6c-8a11-4bb9-8851-8b6e44c95288  \\\n",
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        "\n",
        "       c1dc3f35-324b-4a69-b32c-24652ccf9e3a  \\\n",
        "6351                               0.000008   \n",
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        "2920                               0.000002   \n",
        "4283                               0.000015   \n",
        "3627                               0.000024   \n",
        "4818                               0.000006   \n",
        "3001                               0.000005   \n",
        "3002                               0.000002   \n",
        "5551                               0.000002   \n",
        "6772                               0.000073   \n",
        "30001                              0.000015   \n",
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        "925                                0.000003   \n",
        "\n",
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        "2920                               0.000001   \n",
        "4283                               0.000059   \n",
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        "4818                               0.000003   \n",
        "3001                               0.000003   \n",
        "3002                               0.000004   \n",
        "5551                               0.000001   \n",
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        "30001                              0.000016   \n",
        "915                                0.000004   \n",
        "925                                0.000004   \n",
        "\n",
        "       ce045098-cbfb-4c73-9bbe-6a1d677ae0b0  \\\n",
        "6351                               0.000008   \n",
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        "\n",
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        "3002                               0.000005   \n",
        "5551                               0.000004   \n",
        "6772                               0.000086   \n",
        "30001                              0.000006   \n",
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        "\n",
        "       6d2744ba-4817-482b-ad46-2e4e0897ad88  \\\n",
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        "4818                               0.000018   \n",
        "3001                               0.000010   \n",
        "3002                               0.000025   \n",
        "5551                               0.000005   \n",
        "6772                               0.000475   \n",
        "30001                              0.000035   \n",
        "915                                0.000020   \n",
        "925                                0.000007   \n",
        "\n",
        "       920e47c0-1b19-46e6-b1db-b5fd95e44df0  \\\n",
        "6351                               0.000088   \n",
        "6352                               0.000395   \n",
        "2920                               0.000022   \n",
        "4283                               0.000466   \n",
        "3627                               0.000478   \n",
        "4818                               0.000127   \n",
        "3001                               0.000082   \n",
        "3002                               0.000044   \n",
        "5551                               0.000025   \n",
        "6772                               0.000467   \n",
        "30001                              0.000019   \n",
        "915                                0.000111   \n",
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        "\n",
        "       4808bc63-000a-4a49-a25b-4b817ca5ea54  \\\n",
        "6351                               0.000023   \n",
        "6352                               0.000079   \n",
        "2920                               0.000001   \n",
        "4283                               0.000259   \n",
        "3627                               0.000469   \n",
        "4818                               0.000022   \n",
        "3001                               0.000017   \n",
        "3002                               0.000014   \n",
        "5551                               0.000007   \n",
        "6772                               0.000307   \n",
        "30001                              0.000023   \n",
        "915                                0.000038   \n",
        "925                                0.000009   \n",
        "\n",
        "       6e45dd01-225d-4871-9a3a-f591808ad234  \\\n",
        "6351                               0.000025   \n",
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        "2920                               0.000020   \n",
        "4283                               0.000063   \n",
        "3627                               0.000415   \n",
        "4818                               0.000012   \n",
        "3001                               0.000010   \n",
        "3002                               0.000008   \n",
        "5551                               0.000002   \n",
        "6772                               0.000355   \n",
        "30001                              0.000036   \n",
        "915                                0.000016   \n",
        "925                                0.000005   \n",
        "\n",
        "       1fe98b05-6803-4803-83cd-a59e794b956e  \\\n",
        "6351                               0.000072   \n",
        "6352                               0.000258   \n",
        "2920                               0.000001   \n",
        "4283                               0.000032   \n",
        "3627                               0.000154   \n",
        "4818                               0.000058   \n",
        "3001                               0.000055   \n",
        "3002                               0.000046   \n",
        "5551                               0.000022   \n",
        "6772                               0.000273   \n",
        "30001                              0.000029   \n",
        "915                                0.000025   \n",
        "925                                0.000019   \n",
        "\n",
        "       95c7abfa-a417-4d81-96c2-a952a081d997  \\\n",
        "6351                               0.000038   \n",
        "6352                               0.000174   \n",
        "2920                               0.000005   \n",
        "4283                               0.000373   \n",
        "3627                               0.000138   \n",
        "4818                               0.000044   \n",
        "3001                               0.000054   \n",
        "3002                               0.000056   \n",
        "5551                               0.000017   \n",
        "6772                               0.000175   \n",
        "30001                              0.000060   \n",
        "915                                0.000034   \n",
        "925                                0.000025   \n",
        "\n",
        "       74cba80b-7677-41d6-ab22-10f1a962ba2f  \\\n",
        "6351                               0.000055   \n",
        "6352                               0.000081   \n",
        "2920                               0.000002   \n",
        "4283                               0.000146   \n",
        "3627                               0.000217   \n",
        "4818                               0.000025   \n",
        "3001                               0.000032   \n",
        "3002                               0.000037   \n",
        "5551                               0.000012   \n",
        "6772                               0.000488   \n",
        "30001                              0.000135   \n",
        "915                                0.000015   \n",
        "925                                0.000008   \n",
        "\n",
        "       2ad8d416-08a4-4e6f-947e-d74269d02ab1  \\\n",
        "6351                               0.000021   \n",
        "6352                               0.000129   \n",
        "2920                               0.000006   \n",
        "4283                               0.000074   \n",
        "3627                               0.000079   \n",
        "4818                               0.000029   \n",
        "3001                               0.000020   \n",
        "3002                               0.000035   \n",
        "5551                               0.000008   \n",
        "6772                               0.000068   \n",
        "30001                              0.000016   \n",
        "915                                0.000024   \n",
        "925                                0.000010   \n",
        "\n",
        "       9f440cd6-d55f-4cb6-a433-637ef1f9d38f  \\\n",
        "6351                               0.000014   \n",
        "6352                               0.000041   \n",
        "2920                               0.000002   \n",
        "4283                               0.000046   \n",
        "3627                               0.000033   \n",
        "4818                               0.000009   \n",
        "3001                               0.000008   \n",
        "3002                               0.000003   \n",
        "5551                               0.000003   \n",
        "6772                               0.000079   \n",
        "30001                              0.000018   \n",
        "915                                0.000011   \n",
        "925                                0.000007   \n",
        "\n",
        "       a8a7a335-8e21-4f24-b48b-8764caa21329  \\\n",
        "6351                               0.000009   \n",
        "6352                               0.000022   \n",
        "2920                               0.000003   \n",
        "4283                               0.000004   \n",
        "3627                               0.000011   \n",
        "4818                               0.000006   \n",
        "3001                               0.000008   \n",
        "3002                               0.000006   \n",
        "5551                               0.000002   \n",
        "6772                               0.000034   \n",
        "30001                              0.000028   \n",
        "915                                0.000005   \n",
        "925                                0.000002   \n",
        "\n",
        "       43326f71-c61c-410b-af4b-c71a054e27c9  \\\n",
        "6351                           3.491277e-06   \n",
        "6352                           1.027848e-05   \n",
        "2920                           5.118764e-08   \n",
        "4283                           5.225933e-05   \n",
        "3627                           4.474604e-05   \n",
        "4818                           2.068295e-06   \n",
        "3001                           1.555396e-06   \n",
        "3002                           1.838088e-06   \n",
        "5551                           6.036557e-07   \n",
        "6772                           1.074429e-04   \n",
        "30001                          1.239100e-05   \n",
        "915                            2.851724e-06   \n",
        "925                            3.112513e-06   \n",
        "\n",
        "       dea20128-b180-4da1-9da5-0f00bea3b1ab  \\\n",
        "6351                               0.000050   \n",
        "6352                               0.000488   \n",
        "2920                               0.000001   \n",
        "4283                               0.000109   \n",
        "3627                               0.001568   \n",
        "4818                               0.000069   \n",
        "3001                               0.000047   \n",
        "3002                               0.000082   \n",
        "5551                               0.000023   \n",
        "6772                               0.000793   \n",
        "30001                              0.000034   \n",
        "915                                0.000036   \n",
        "925                                0.000026   \n",
        "\n",
        "       c09e8a88-5a82-4fd6-8d03-ef3ecb988003      \n",
        "6351                               0.000018 ...  \n",
        "6352                               0.000023 ...  \n",
        "2920                               0.000003 ...  \n",
        "4283                               0.000064 ...  \n",
        "3627                               0.000058 ...  \n",
        "4818                               0.000008 ...  \n",
        "3001                               0.000007 ...  \n",
        "3002                               0.000008 ...  \n",
        "5551                               0.000006 ...  \n",
        "6772                               0.000110 ...  \n",
        "30001                              0.000030 ...  \n",
        "915                                0.000006 ...  \n",
        "925                                0.000002 ...  \n",
        "\n",
        "[13 rows x 700 columns]"
       ]
      }
     ],
     "prompt_number": 40
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "def extract_immune_genes(df, genes):\n",
      "    merged = df.join(genes, how='inner')\n",
      "    merged.index = merged.Name\n",
      "    return merged.drop('Name', axis=1).T"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 41
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "deceased_immune_rsem = extract_immune_genes(deceased_rsem, genes)\n",
      "living_immune_rsem = extract_immune_genes(living_rsem, genes)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 42
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 42
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "def overlay_histograms(good, bad):\n",
      "    ax = plt.axes()\n",
      "    ax.hist(np.array(good), normed=True)\n",
      "    ax.hist(np.array(bad), normed=True)\n",
      "    ax.legend(('Good', 'Bad'))\n",
      "    "
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 43
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "overlay_histograms(living_immune_rsem.STAT1, deceased_immune_rsem.STAT1)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "display_data",
       "png": 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p2sssLRYL4+PHsVo3ADAcDjDx7Hw4P4Yra/qHZ1KiyFmksHPnTnbu3Dknc1+8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\nSkEhIiKmFBQiImJKQSEiIqb+PzBYpEmDqUURAAAAAElFTkSuQmCC\n",
       "text": [
        "<matplotlib.figure.Figure at 0x109325610>"
       ]
      }
     ],
     "prompt_number": 44
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [],
     "language": "python",
     "metadata": {},
     "outputs": []
    }
   ],
   "metadata": {}
  }
 ]
}