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timodonnell committed Dec 22, 2017
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[![Build Status](https://travis-ci.org/hammerlab/mhcflurry.svg?branch=master)](https://travis-ci.org/hammerlab/mhcflurry) [![Coverage Status](https://coveralls.io/repos/github/hammerlab/mhcflurry/badge.svg?branch=master)](https://coveralls.io/github/hammerlab/mhcflurry?branch=master)

# mhcflurry
Open source peptide/MHC I binding affinity prediction. Competitive accuracy, fast,
[documented](http://www.hammerlab.org/mhcflurry/).
([MHC I](https://en.wikipedia.org/wiki/Major_histocompatibility_complex) ligand
prediction package with competitive accuracy and a fast and [documented](http://www.hammerlab.org/mhcflurry/)
implementation.

MHCflurry supports Class I peptide/MHC binding affinity prediction using
ensembles of allele-specific models. You can fit MHCflurry models to your own data
or download models that we fit to data from
[IEDB](http://www.iedb.org/home_v3.php) and [Kim 2014](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-241).

MHCflurry supports Python versions 2.7 and 3.4+. It uses the [keras](https://keras.io)
MHCflurry runs on Python versions 2.7 and 3.4+. It uses the [keras](https://keras.io)
neural network library via either the Tensorflow or Theano backends. GPUs may
optionally be used for a generally modest speed improvement.

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