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Add support for mhcflurry percentile ranks and custom MHCflurry models dir #124

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merged 5 commits into from Dec 4, 2017

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timodonnell
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If the user is using MHCflurry models that support percentile ranks, they will be included in mhctools output. Otherwise, the results stay the same as they currently are (NaNs for percentile ranks).

Also add --mhc-predictor-models-path argument for specifying MHCflurry models directory.

…s dir

If the user is using MHCflurry models that support percentile ranks, they will be included in mhctools output. Otherwise, the results stay the same (NaNs for percentile ranks).

Also add --mhc-predictor-models-path argument for specifying MHCflurry models directory.
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coveralls commented Dec 4, 2017

Coverage Status

Changes Unknown when pulling b0326a6 on percentile-ranks into ** on master**.

@timodonnell
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@iskandr @julia326 cool if I merge this? Please note I added another change today to this PR b0326a6 (throw error on empty FASTA file, which I've hit because our fasta file returns empty data on parse errors). Pretty sure it's fine but want your OK first because I don't want to mess up vaxrank etc.

@timodonnell timodonnell merged commit c15862b into master Dec 4, 2017
@timodonnell timodonnell deleted the percentile-ranks branch December 4, 2017 21:30
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3 participants