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fix using magic-classes in field #132

Merged
merged 2 commits into from
Dec 24, 2023
Merged

fix using magic-classes in field #132

merged 2 commits into from
Dec 24, 2023

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hanjinliu
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@hanjinliu hanjinliu commented Dec 24, 2023

There were redundant copy during magicclass construction, which caused wrong reference.
This PR also fixes #131.

Summary by CodeRabbit

  • New Features

    • Introduced a new method to check if the "%gui qt" magic is active in the IPython kernel.
    • Added new test functions to validate field choices and class attribute behaviors.
  • Enhancements

    • Improved image data handling within the Main class.
    • Updated the default behavior of the show method to run by default.
  • Refactor

    • Changed parameter type in as_remote_getter for better context usage.
    • Streamlined error handling in the _execute method of macros.
    • Optimized conditional logic in the convert_attributes function and the copy_class utility.
  • Bug Fixes

    • Fixed the condition for key comparison in the copy_class function.
  • Documentation

    • Expanded docstrings for clarity on method annotations and updated exception messages.
  • Style

    • Removed an obsolete TODO comment.
    • Revised comments for clarity.

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coderabbitai bot commented Dec 24, 2023

Walkthrough

The recent updates to magicclass reflect a refinement in the handling of image data, GUI operations, and error management. A notable change is the requirement for users to explicitly run the application event loop by setting show(run=True). Other changes include improved parameter typing, clearer documentation, and more precise conditional logic in various utility functions, enhancing the module's robustness and usability.

Changes

Files Summary
magicclass/use_menubar.py, magicclass/fields/_fields.py Updated image data handling and method parameter typing.
magicclass/_app.py Added gui_qt_is_active function and updated run_app function logic.
magicclass/_gui/_base.py, magicclass/_gui/_macro.py Removed outdated comments and modified error handling and attribute conversion logic.
magicclass/_gui/class_gui.py Changed default behavior of show method to run the application event loop.
magicclass/_gui/utils.py Refined conditional logic in copy_class function.
magicclass/testing/_gui_test.py, tests/test_choices.py, tests/test_fields.py Expanded docstrings and added new test functions.

Assessment against linked issues

Objective Addressed Explanation
Explicitly use show(run=True) in magicclass applications (#131) The change in magicclass/_gui/class_gui.py reflects the requirement for users to explicitly start the event loop with show(run=True).

Poem

In the realm of code where the magic's spun,
A rabbit hopped in, and the changes were done.
With a flip and a hop, show(run=True) is clear,
Now the magic's more robust, let's give a cheer! 🎉🐰

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Review Status

Actionable comments generated: 3

Configuration used: CodeRabbit UI

Commits Files that changed from the base of the PR and between 962d06a and 8f2f7b0.
Files selected for processing (10)
  • examples/use_menubar.py (2 hunks)
  • magicclass/_app.py (2 hunks)
  • magicclass/_gui/_base.py (2 hunks)
  • magicclass/_gui/_macro.py (1 hunks)
  • magicclass/_gui/class_gui.py (1 hunks)
  • magicclass/_gui/utils.py (1 hunks)
  • magicclass/fields/_fields.py (2 hunks)
  • magicclass/testing/_gui_test.py (1 hunks)
  • tests/test_choices.py (2 hunks)
  • tests/test_fields.py (1 hunks)
Additional comments: 15
magicclass/_app.py (1)
  • 46-47: The modification to run_app correctly adds a condition to check if the "%gui qt" magic is active before executing the application. This change should be tested to ensure that the application's behavior is as expected when the "%gui qt" magic is not active.
examples/use_menubar.py (2)
  • 56-56: The field declaration has been added to replace the previous Image declaration. Ensure that the field is properly initialized and used throughout the class.
Verification successful

I will refine the ast-grep pattern to correctly match the expected code structure and verify the usage of the field declaration within the Main class.


I will now use the rg command to search for the field declaration within the Main class in the use_menubar.py file to verify its usage.


I will now use the fd command to find the exact location of the use_menubar.py file within the repository to ensure that we are searching in the correct file.


I will now use the cat command to display the contents of the use_menubar.py file to manually inspect the usage of the field declaration within the Main class.


The contents of use_menubar.py confirm the presence of the field declaration within the Main class. The field is initialized with Image, which is imported from magicgui.widgets. This matches the change described in the PR summary, where the Image declaration was replaced with a field declaration from the magicclass module.

The methods Open_image, Save_image, Gaussian_filter, and Sobel_filter within the Main class use the image attribute, which is now a field containing an Image. This suggests that the field declaration is being used correctly to handle image data within the class.

Based on the provided output, the field declaration in the Main class of the use_menubar.py file is verified to be correctly implemented as per the changes described in the PR.

Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Verify that the field declaration is properly used in the Main class
ast-grep --lang python --pattern $'class Main {
  $$$
  image = field($_)
  $$$
}'

Length of output: 428



Script:

#!/bin/bash
# Refine the ast-grep pattern to match the field declaration within the Main class
ast-grep --lang python --pattern $'class Main {
  $$$
  field($_)
  $$$
}'

Length of output: 420



Script:

#!/bin/bash
# Use ripgrep to search for the field declaration within the Main class in the use_menubar.py file
rg "class Main" -A 10 examples/use_menubar.py | rg "field"

Length of output: 58



Script:

#!/bin/bash
# Find the location of the use_menubar.py file within the repository
fd use_menubar.py

Length of output: 43



Script:

#!/bin/bash
# Display the contents of the use_menubar.py file
cat examples/use_menubar.py

Length of output: 1536

* 53-54: The `Sobel_filter` method correctly updates the `image` attribute using the new `field` declaration. Ensure that the method is tested to verify that the image processing is performed correctly.
magicclass/_gui/utils.py (1)
  • 52-52: The change in the copy_class function corrects the comparison condition for the key variable. This is a simple syntax correction that should not affect the functionality, but it's good to ensure that there are tests covering this function to prevent regression.
magicclass/testing/_gui_test.py (1)
  • 70-75: The expanded docstring for the check_function_gui_buildable function provides additional clarity on its purpose, specifically mentioning the detection of errors related to method annotations. This is a good practice for maintainability and clarity of the testing code.
tests/test_choices.py (2)
  • 1-1: The import of Annotated from the typing module is necessary for the new test function test_field_in_other_class. This is a standard practice for using type annotations with additional metadata in Python.

  • 116-130: The new test function test_field_in_other_class is added to verify the functionality of fields in different classes. Ensure that this test function is executed and covers the expected scenarios for the field choices.

tests/test_fields.py (1)
  • 800-824: The new test function test_using_same_class is well-structured and performs assertions on the attributes and methods of the Laser and LaserControl classes. It is important to ensure that this test is included in the test suite and that it passes successfully.
Verification successful

The test_using_same_class function is confirmed to be present within the tests/test_fields.py file.

Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Verify that the test_using_same_class function is included in the test suite
rg --type python "def test_using_same_class"

Length of output: 77



Script:

#!/bin/bash
# Verify that the test_using_same_class function is included in the test suite
# Removing the file type specification to ensure ripgrep searches all text files
rg "def test_using_same_class"

Length of output: 82

magicclass/fields/_fields.py (4)
  • 357-361: The change in the parameter type of the as_remote_getter method from Any to MagicTemplate is consistent with the PR objectives to make the behavior of magic classes more predictable and user-controlled. The docstring has been updated accordingly, which is good for maintaining clarity in the codebase.

  • 368-374: The error handling in the as_remote_getter method provides a clear message when the objname is not found within clsnames. This is an improvement in code clarity and correctness, aligning with the PR objectives.

  • 384-388: The logic to navigate nested class structures in the as_remote_getter method is sound. It correctly identifies the instance of the parent class and retrieves the appropriate widget. The error handling for when the widget does not have a value attribute is also appropriate, ensuring type safety.

  • 354-361: > Note: This review was outside the patches, and no patch overlapping with it was found. Original lines [1-353]

The rest of the MagicField class and related functions appear to be unchanged in this hunk. The existing code should be assumed to be correct and functional as per the instructions. Therefore, no further comments are necessary for the unchanged parts of the code.

magicclass/_gui/_base.py (3)
  • 765-770: The addition of a title separator with a close button to the FunctionGuiPlus is a good UX improvement, allowing users to dismiss the GUI easily.

  • 1263-1268: The conditional logic within the convert_attributes function has been modified to handle instances of _MagicTemplateMeta by creating a copy of the object. This change seems to be part of the refactoring process to avoid redundant copies and incorrect references.

  • 765-770: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [765-1268]

To ensure that the changes made to the MagicTemplate class and the convert_attributes function do not introduce any regressions, it would be beneficial to run the existing test suite and, if possible, perform manual testing of the affected functionality.

Comment on lines +338 to 346
def show(self, run: bool = True) -> None:
"""
Show GUI. If any of the parent GUI is a dock widget in napari, then this
will also show up as a dock widget (floating if in popup mode).

Parameters
----------
run : bool, default False
run : bool, default True
If true, application gets executed.
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The default value for the run parameter in the show method has been changed to True. This change will start the event loop by default when show is called. Ensure that all existing calls to this method without specifying the run parameter are reviewed to prevent unintended behavior changes in the application flow.

@@ -277,7 +277,7 @@ def _execute(self, code: Expr):
"""Run macro."""
parent = self._search_parent_magicclass()
ns = {Symbol.var("ui"): parent}
with parent._error_mode.raise_with_handler(self):
with parent._error_mode.raise_with_handler(parent):
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The context manager in the _execute method has been modified. Previously, it used parent._error_mode.raise_with_handler(parent) to handle errors, but now it uses parent directly. Verify that the new context manager setup correctly handles errors and that the change does not introduce any regression in error handling.

Comment on lines +26 to +30
def gui_qt_is_active() -> bool:
"""True only if "%gui qt" magic is called in ipython kernel."""
shell = get_shell()

return shell and shell.active_eventloop == "qt"
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💡 NOTE
Codebase verification is a beta feature.

The search for references to the gui_qt_is_active function within Python files only returned occurrences in the magicclass/_app.py file itself. There were no test files listed in the output, suggesting that there may not be any direct tests for this function. However, without seeing the full structure of the test directory, it's not possible to conclusively determine the absence of relevant tests.

Given the information at hand, it appears that the gui_qt_is_active function may not be explicitly covered by unit tests. It is recommended to add tests to ensure its correct behavior, or if tests do exist but were not captured by the search, to verify that they adequately cover the new function.

Analysis chain

The new function gui_qt_is_active correctly checks the IPython kernel for the active event loop. Ensure that this function is covered by unit tests to validate its behavior in different scenarios.

Scripts Executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Verify that the gui_qt_is_active function is covered by tests
rg --type python "def test_gui_qt_is_active"

Length of output: 77



Script:

#!/bin/bash
# Verify that the gui_qt_is_active function is covered by tests
rg "def test_gui_qt_is_active"

Length of output: 32



Script:

#!/bin/bash
# Search for any references to the gui_qt_is_active function within test files
rg "gui_qt_is_active" --type py

Length of output: 132

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Review Status

Actionable comments generated: 0

Configuration used: CodeRabbit UI

Commits Files that changed from the base of the PR and between 8f2f7b0 and 1fa4c1c.
Files selected for processing (1)
  • tests/test_choices.py (2 hunks)
Files skipped from review as they are similar to previous changes (1)
  • tests/test_choices.py

@hanjinliu hanjinliu merged commit f626445 into main Dec 24, 2023
16 checks passed
@hanjinliu hanjinliu deleted the fix-multi-field branch December 24, 2023 07:10
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Explicitly use show(run=True) in magicclass applications.
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