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v0.2.0 (r355)
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@haowenz haowenz released this 23 Feb 04:30
· 134 commits to master since this release
v0.2.0
3ce2414

Note that two versions are attached. You should use no-cache version for now on mapping Hi-C reads or when you run the standard version of Chromap and get errors.

This release fixed the following bugs.

  • SEQ and QUAL in SAM are now correct for reverse complementary mappings (#70). If you previously used Chromap to generate SAM output, you may want to rerun Chromap with the same command to get correct SEQ and QUAL in SAM.
  • An issue in low memory mode was fixed. Now the memory usage for low memory mode becomes more stable and is around 20GB for all the output formats no matter what the number of reads is. This should also fix the issue in #37.
  • Low memory mode for single-end data is now supported, which should fix the issue in #59.

More explanations were added for custom reference sequence order on mapping ordering and pairs flipping in the document.

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