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issue with test run #154
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Hi @vitorpavinato, sorry for the trouble running the test dataset. Could you provide your Snakemake version, as well as the output from the log file specified in the your post? |
Hi @cademirch, Sure, here is the snakemake version: 7.32.4 I am using a SLURM cluster and I ran on scratch.
But I didn't return anything. Thanks for the prompt response. |
The log files should be in the .test/ecoli directory within the snparcher
directory.
…On Tue, Jan 30, 2024 at 17:13 Vitor Pavinato ***@***.***> wrote:
Hi @cademirch <https://github.com/cademirch>,
Sure, here is the snakemake version: 7.32.4
Where I can find the log file?
I am using a SLURM cluster and I ran on scratch.
I try to find the file with
find / -n 2024-01-30T163042.968256.snakemake.log 2>/dev/null
But I didn't return anything.
Thanks for the prompt response.
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Great, Here is what I got from the log file:
|
Thanks. Can you also paste in the split intervals log? Should be in .test/ecoli/logs |
is this one found at
|
Thanks for posting that @vitorpavinato. Unfortunately, I cannot seem to recreate this. Could you let me know your |
Yes, sure. The conda environment I set has
|
Could you try with |
Hi @cademirch. Just to let you know the test worked with |
Thanks for the update @vitorpavinato. We've pinned the python and snakemake version in the docs now. |
Hi,
I got this error message when I tried to run the test code:
Thanks
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