squigulator-v0.3.0

Newly added features and major updates in this version compared to previous v0.2.1 are:

• added support for the new RNA004 chemistry
• dna-r10- profiles now generate 5KHz data to match with latest updates to ONT chemistry
• --trans-trunc option for simulating truncated transcript lengths in RNA simulation
• --trans-count option for simulating transcript abundance in RNA simulation
• --cdna option for simulation cDNA data
• two new developer options --median-before-mean and --median-before-std

Documentation newly added:

• parameter profiles: https://hasindu2008.github.io/squigulator/docs/profile.html

Bug fixes:

• --dwell-mean option was mistakenly erroring out which is now fixed

Internal code changes not affecting the user:

• code restructure
• make file updates
• more test cases
• update slow5lib