Skip to content

Please see Webdev-for-BioNLP-literature-tool for the most up-to-date code. I'll up date this repo later (its 5 months out of date!!!!!). Code here scrapes pubmed XML for basic info, NER, document clustering, visualization

hclent/BioNLP-literature-tool

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

60 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

BioNLP-literature-tool

Under construction

#Information retrieval# Entrez_IR.py This code uses NCBI's API.

#NLP# preprocess.py uses University of Arizona's' CluLab's NLP tools for tokenization, lemmitization, named entity recognition, etc.

#Topic Modeling / Clustering# I am trying several topic modeling and clustering algorithms, including Latent Dirichlet Allocation (LDA), Latent Semantic Analysis (LSA), and K-means clustering.

#Web Interface# Please see my repository called "Webdev for bioNLP lit tool" https://github.com/hclent/Webdev-for-bioNLP-lit-tool

#Graveyard# This is where I am keeping depreciated code that I am no longer using for my project but that I think is still valuable for the github community :)

About

Please see Webdev-for-BioNLP-literature-tool for the most up-to-date code. I'll up date this repo later (its 5 months out of date!!!!!). Code here scrapes pubmed XML for basic info, NER, document clustering, visualization

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages