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hdakpo committed Dec 11, 2023
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15 changes: 8 additions & 7 deletions .Rbuildignore
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^.*\.Rproj$
^\.Rproj\.user$
^LICENSE\.md$
^revdep$
^cran-comments\.md$
^README\.Rmd$
^\.github$
^.*\.Rproj$
^\.Rproj\.user$
^LICENSE\.md$
^revdep$
^cran-comments\.md$
^README\.Rmd$
^\.github$
^CRAN-SUBMISSION$
3 changes: 3 additions & 0 deletions CRAN-SUBMISSION
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Version: 1.2.1
Date: 2023-12-11 12:17:36 UTC
SHA: 4e62a51320b94d1ab30f1ad66f0c0585956022f4
48 changes: 24 additions & 24 deletions DESCRIPTION
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Package: ucminf
Title: General-Purpose Unconstrained Non-Linear Optimization
Version: 1.2.0
Authors@R: c(
person("K Hervé", "Dakpo", email = "k-herve.dakpo@inrae.fr",
role = c("ctb", "cre")),
person("Hans Bruun", "Nielsen", role = "aut"),
person("Stig Bousgaard", "Mortensen", role = "aut")
)
Description: An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
License: GPL (>= 2)
URL: https://github.com/hdakpo/ucminf
BugReports: https://github.com/hdakpo/ucminf/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
R (>= 3.5.0)
Suggests:
numDeriv
Package: ucminf
Title: General-Purpose Unconstrained Non-Linear Optimization
Version: 1.2.1
Authors@R: c(
person("K Hervé", "Dakpo", email = "k-herve.dakpo@inrae.fr",
role = c("ctb", "cre")),
person("Hans Bruun", "Nielsen", role = "aut"),
person("Stig Bousgaard", "Mortensen", role = "aut")
)
Description: An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
License: GPL (>= 2)
URL: https://github.com/hdakpo/ucminf
BugReports: https://github.com/hdakpo/ucminf/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
R (>= 3.5.0)
Suggests:
numDeriv
6 changes: 6 additions & 0 deletions NEWS.md
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# ucminf 1.2.1

## BUG FIXES

* Fixed warnings associated with arguments format in interface.c file

# ucminf 1.2.0

* Added a `NEWS.md` file to track changes to the package.
Expand Down
38 changes: 16 additions & 22 deletions cran-comments.md
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## R CMD check results

0 errors | 0 warnings | 1 note

* checking CRAN incoming feasibility ... NOTE
Maintainer: 'K Hervé Dakpo <k-herve.dakpo@inrae.fr>'

Taking over orphaned package.

## revdepcheck results

We checked 23 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 2 packages

Issues with CRAN packages are summarised below.

### Failed to check

* mets (NA)
* nlmixr2est (NA)
## R CMD check results

0 errors | 0 warnings | 0 note

## revdepcheck results

We checked 22 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 1 packages

Issues with CRAN packages are summarised below.

### Failed to check

* mets (NA)
61 changes: 30 additions & 31 deletions revdep/README.md
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# Platform

|field |value |
|:--------|:--------------------------------------|
|version |R version 4.3.0 (2023-04-21 ucrt) |
|os |Windows 11 x64 (build 22621) |
|system |x86_64, mingw32 |
|ui |RStudio |
|language |(EN) |
|collate |French_France.utf8 |
|ctype |French_France.utf8 |
|tz |Europe/Paris |
|date |2023-05-26 |
|rstudio |2023.03.1+446 Cherry Blossom (desktop) |
|pandoc |NA |

# Dependencies

|package |old |new |Δ |
|:-------|:-------|:-----|:--|
|ucminf |1.1-4.3 |1.2.0 |* |

# Revdeps

## Failed to check (2)

|package |version |error |warning |note |
|:----------|:-------|:-----|:-------|:----|
|mets |1.3.2 |1 | |2 |
|nlmixr2est |2.1.5 |2 | | |

# Platform

|field |value |
|:--------|:------------------------------------------------------------------------------------|
|version |R version 4.3.2 (2023-10-31 ucrt) |
|os |Windows 11 x64 (build 22631) |
|system |x86_64, mingw32 |
|ui |RStudio |
|language |(EN) |
|collate |French_France.utf8 |
|ctype |French_France.utf8 |
|tz |Europe/Paris |
|date |2023-12-11 |
|rstudio |2023.09.1+494 Desert Sunflower (desktop) |
|pandoc |3.1.1 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) |

# Dependencies

|package |old |new |Δ |
|:-------|:-----|:-----|:--|
|ucminf |1.2.0 |1.2.1 |* |

# Revdeps

## Failed to check (1)

|package |version |error |warning |note |
|:-------|:-------|:-----|:-------|:----|
|mets |1.3.3 |1 | |1 |

25 changes: 12 additions & 13 deletions revdep/cran.md
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## revdepcheck results

We checked 23 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 2 packages

Issues with CRAN packages are summarised below.

### Failed to check

* mets (NA)
* nlmixr2est (NA)
## revdepcheck results

We checked 22 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 1 packages

Issues with CRAN packages are summarised below.

### Failed to check

* mets (NA)
103 changes: 28 additions & 75 deletions revdep/failures.md
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# mets

<details>

* Version: 1.3.2
* GitHub: https://github.com/kkholst/mets
* Source code: https://github.com/cran/mets
* Date/Publication: 2023-01-17 09:40:07 UTC
* Number of recursive dependencies: 95

Run `revdepcheck::revdep_details(, "mets")` for more info

</details>

## In both

* R CMD check timed out


* checking C++ specification ... NOTE
```
Specified C++11: please drop specification unless essential
```

* checking installed package size ... NOTE
```
installed size is 8.4Mb
sub-directories of 1Mb or more:
R 1.7Mb
doc 2.6Mb
libs 2.3Mb
```

# nlmixr2est

<details>

* Version: 2.1.5
* GitHub: https://github.com/nlmixr2/nlmixr2est
* Source code: https://github.com/cran/nlmixr2est
* Date/Publication: 2023-04-22 19:50:02 UTC
* Number of recursive dependencies: 198

Run `revdepcheck::revdep_details(, "nlmixr2est")` for more info

</details>

## In both

* checking tests ...
```
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-00-reload-ll.R:30:3'): between session saem ll works ───────────
Error in `gzfile(file, "rb")`: cannot open the connection
Backtrace:
1. ├─withr::with_tempdir(...) at test-00-reload-ll.R:30:2
2. │ └─withr::with_dir(tmp, code)
3. │ └─base::force(code)
4. └─base::readRDS("fit.rds") at test-00-reload-ll.R:36:4
5. └─base::gzfile(file, "rb")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 157 ]
Error: Test failures
Execution halted
```

* R CMD check timed out


# mets

<details>

* Version: 1.3.3
* GitHub: https://github.com/kkholst/mets
* Source code: https://github.com/cran/mets
* Date/Publication: 2023-12-05 00:20:05 UTC
* Number of recursive dependencies: 98

Run `revdepcheck::revdep_details(, "mets")` for more info

</details>

## In both

* R CMD check timed out


* checking installed package size ... NOTE
```
installed size is 8.7Mb
sub-directories of 1Mb or more:
R 1.7Mb
doc 2.8Mb
libs 2.3Mb
```

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